Search result

BaseInfo

ncRNA ID novel_gma_miR5196
Species Glycine max
Class miRNA
Genome position Chr6:18005541-18005694 [-]
Reference genome Glycine_max_v2.0
Source SRR1295516
Length 23
Mature sequence(if miRNA) 132 - GUUAAGUGAUGACGUGGUAGACA - 154
Stem-loop(if miRNA) --        A       GU         A           CA   U     AU    C   U  A  C     CAC
  GUUAAGUG UGACGUG  AGACAUAGU UUACGUUAUCA  UCU GUCAC  AUAC UCA UG CA AUCAU   U
  |||||||| |||||||  ||||||||| |||||||||||  ||| |||||  |||| ||| || || |||||
  CAAUUCAC ACUGUAC  UUUGUGUCA AGUGCGGUAGU  AGG UAGUG  UGUG AGU AU GU UAGUA   U
GG        A       UG         C           AC   U     GC    C   C  G  A     ACU
Stem-loop sequence GUUAAGUGAUGACGUGGUAGACAUAGUAUUACGUUAUCACAUCUUGUCACAUAUACCUCAUUGACACAUCAUCACUUUCAAUGAUAUGGUACUGACGUGUCGGUGAUUGGACAUGAUGGCGUGACACUGUGUUUGUCAUGUCAACACUUAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766262.1
ncRNA:23   ACAGAUGGUGCAGUAGUGAAUUG   1
  |||=||=||||||||||||||||
targets:762   UGUUUAUCACGUCAUCACUUAAC   784

1.0 PREDICTED: Glycine max uncharacterized LOC100804377 (LOC100804377), mRNA uncharacterized LOC100804377(LOC100804377) coding protein psRNATarget