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BaseInfo

ncRNA ID novel_gma_miR5186
Species Glycine max
Class miRNA
Genome position Chr14:38292175-38292278 [-]
Reference genome Glycine_max_v2.0
Source SRR3160566;DRR031984
Length 21
Mature sequence(if miRNA) 1 - AUUUACAAAGAAAAAUGGACC - 21
Stem-loop(if miRNA) --  AAC              A     AUA               --U  AAA
  UC   UUUUCUUUGUAAAU UUAGA   GGUUUUCUUUCUUUU   CC   A
  ||   |||||||||||||| |||||   |||||||||||||||   ||   U
  AG   AAAAGAAACAUUUA AAUUU   CCAAAAGGAAGAAAA   GG   A
CC  GUA              C     -AA               CCC  AAC
Stem-loop sequence UCAACUUUUCUUUGUAAAUAUUAGAAUAGGUUUUCUUUCUUUUUCCAAAAUACAAGGCCCAAAAGAAGGAAAACCAAUUUAACAUUUACAAAGAAAAAUGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545895.3
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  **|*|||||||||||||||||
targets:772   UUUACAUUUUUCUUUGUAAAU   792

1.0 PREDICTED: Glycine max 16.9 kDa class I heat shock protein 1-like (LOC100813153), mRNA 16.9 kDa class I heat shock protein 1-like(LOC100813153) coding protein psRNATarget
XM_006588762.2
ncRNA:21   CCAGGUA--AAAAGAAACAUUUA   1
  *||||||--||||||||||||||
targets:1808   UGUCCAUAUUUUUCUUUGUAAAU   1830

2.5 PREDICTED: Glycine max heat stress transcription factor A-3-like (LOC100807323), mRNA heat stress transcription factor A-3-like(LOC100807323) coding protein psRNATarget
XM_003522988.3
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  |*|=|||||||||||||=|||
targets:167   GAUUCAUUUUUCUUUGUGAAU   187

2.5 PREDICTED: Glycine max F-box/kelch-repeat protein At5g42350-like (LOC100813797), mRNA F-box/kelch-repeat protein At5g42350-like(LOC100813797) coding protein psRNATarget
XM_014777883.1
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  **|=|||||||=|||||||||
targets:2029   ACUUCAUUUUUUUUUGUAAAU   2049

2.5 PREDICTED: Glycine max probable receptor-like protein kinase At1g67000 (LOC100798745), mRNA probable receptor-like protein kinase At1g67000(LOC100798745) coding protein psRNATarget
XM_014774397.1
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  ||*|||||||||||||*||||
targets:1475   GGGCCAUUUUUCUUUGAAAAU   1495

2.5 PREDICTED: Glycine max B-box zinc finger protein 20-like (LOC100800981), transcript variant X1, mRNA B-box zinc finger protein 20-like(LOC100800981) coding protein psRNATarget
XM_003519052.3
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  **||||||||||||||*|||*
targets:1667   UAUCCAUUUUUCUUUGGAAAA   1687

2.5 PREDICTED: Glycine max probable inactive purple acid phosphatase 16 (LOC100803047), mRNA probable inactive purple acid phosphatase 16(LOC100803047) coding protein psRNATarget
XM_003554364.3
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  *||=|*||||||||||||||*
targets:2535   AGUUCUUUUUUCUUUGUAAAA   2555

3.0 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase PXC1 (LOC100781702), mRNA leucine-rich repeat receptor-like protein kinase PXC1(LOC100781702) coding protein psRNATarget
XM_006576925.2
ncRNA:21   CCAGGUAAAAAGAAACAUUUA   1
  |*|==*|||||||||||||||
targets:21   GUUUUUUUUUUCUUUGUAAAU   41

3.0 PREDICTED: Glycine max uncharacterized LOC100801297 (LOC100801297), transcript variant X2, mRNA uncharacterized LOC100801297(LOC100801297) coding protein psRNATarget