Search result

BaseInfo

ncRNA ID	novel_gma_miR5183
Species	Glycine max
Class	miRNA
Genome position	Chr12:26594803-26594884 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1292924
Length	22
Mature sequence(if miRNA)	61 - CUAGGGUUUAGGGUUUAGGGUU - 82
Stem-loop(if miRNA)	--G      G      G      G  AG  G    G    G    UUUAGG CUUAGG UUUAGG UU  GG UUAG UUAU U    |||||| |||||| |||||| ||  || |||| ||||    GGAUUU GGAUUU GGAUCC GG  UU GGUU AGUA U UUG      G      G      G  AU  G    G    U
Stem-loop sequence	GUUUAGGGCUUAGGGUUUAGGGUUAGGGGUUAGGUUAUGUUUAUGAGUUGGGUUUAGGGCCUAGGGUUUAGGGUUUAGGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006605735.2	ncRNA:22   UUGGGAUUUGGGAUUUGGGAUC   1   =|*|*||||||||||||||||* targets:98   GAGCAUAAACCCUAAACCCUAC   119 Target Full Sequence	2.0	PREDICTED: Glycine max rhodanese-like domain-containing protein 6 (LOC100786152), mRNA	rhodanese-like domain-containing protein 6(LOC100786152)	coding protein	psRNATarget
XM_003530761.3	ncRNA:22   UUGGG--AUUUGGGAUUUGGGAUC   1   **|||--||||||||||||||||| targets:26   UUCCCGGUAAACCCUAAACCCUAG   49 Target Full Sequence	2.5	PREDICTED: Glycine max probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase (LOC100789776), mRNA	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase(LOC100789776)	coding protein	psRNATarget
XM_006602058.2	ncRNA:22   UUGGGA--UUUGGGAUUUGGGAUC   1   **||||--|||||||||||||||| targets:13   UUCCCUGUAAACCCUAAACCCUAG   36 Target Full Sequence	2.5	PREDICTED: Glycine max probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase (LOC100807160), mRNA	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase(LOC100807160)	coding protein	psRNATarget
XM_003553675.3	ncRNA:22   UUGGGAUUUGGGAUUUGGGAUC   1   **||||||||||||||||||** targets:391   UUCCCUAAACCCUAAACCCUCU   412 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807006 (LOC100807006), mRNA	uncharacterized LOC100807006(LOC100807006)	coding protein	psRNATarget
XM_006577175.2	ncRNA:22   UUGGGAUUUGGGAUUUGGGAUC   1   **||||||||||||||||||** targets:304   UUCCCUAAACCCUAAACCCUCU   325 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102669955 (LOC102669955), mRNA	uncharacterized LOC102669955(LOC102669955)	coding protein	psRNATarget
XM_003529220.3	ncRNA:22   UUGGGAUUUGGGAUUUGGGAUC   1   |=|*|*|||||||||||||||* targets:30   AGCACAAAACCCUAAACCCUAU   51 Target Full Sequence	3.0	PREDICTED: Glycine max heat shock 70 kDa protein, mitochondrial-like (LOC100796791), mRNA	heat shock 70 kDa protein, mitochondrial-like(LOC100796791)	coding protein	psRNATarget
XM_003530961.3	ncRNA:22   UUGGGAUUUGGGAUUUGGGAUC   1   |=|*|*|||||||||||||||* targets:9   AGCACAAAACCCUAAACCCUAA   30 Target Full Sequence	3.0	PREDICTED: Glycine max heat shock 70 kDa protein, mitochondrial-like (LOC100811003), mRNA	heat shock 70 kDa protein, mitochondrial-like(LOC100811003)	coding protein	psRNATarget