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BaseInfo

ncRNA ID	novel_gma_miR5182
Species	Glycine max
Class	miRNA
Genome position	Chr8:47448456-47448556 [-]
Reference genome	Glycine_max_v2.0
Source	SRR3160566
Length	21
Mature sequence(if miRNA)	1 - GAAGGUCCUGAGUUCAUCUCC - 21
Stem-loop(if miRNA)	--    AAU    C                  CUAUAAU       GUG    U   AGAU   CUCA GACCUUUUGCACCCUGGU       GAAGUUG   GAGA G   ||||   |||| ||||||||||||||||||       |||||||   |||| A   UCUA   GAGU CUGGAAGAUGUGGGAUUA       UUUCAGU   CUCU A CC    CUU    C                  ------U       --A    C
Stem-loop sequence	AGAUAAUCUCACGACCUUUUGCACCCUGGUCUAUAAUGAAGUUGGUGGAGAUGAACUCUCAUGACUUUUAUUAGGGUGUAGAAGGUCCUGAGUUCAUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KJ607990.1	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   ||||||||*|||||||||||= targets:172   GGAGAUGACCUCAGGACCUUU   192 Target Full Sequence	2.5	Glycine max clone Glyma18g53680 FT1a mRNA, complete cds	NA	coding protein	psRNATarget
FJ573245.1	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   ||||||||*|||||||||||= targets:172   GGAGAUGACCUCAGGACCUUU   192 Target Full Sequence	2.5	Glycine max twin sister of FT-like protein 2 (TSF2) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254175.1	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   ||||||||*|||||||||||= targets:210   GGAGAUGACCUCAGGACCUUU   230 Target Full Sequence	2.5	Glycine max protein TWIN SISTER of FT-like (LOC100815008), mRNA	protein TWIN SISTER of FT-like(LOC100815008)	coding protein	psRNATarget
AB550120.1	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   ||||||||*|||||||||||= targets:210   GGAGAUGACCUCAGGACCUUU   230 Target Full Sequence	2.5	Glycine max GmFT1a mRNA for flowering locus T, complete cds	NA	coding protein	psRNATarget
XM_006575169.2	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   **|||||=||||||||*|||| targets:1025   UAAGAUGGACUCAGGAGCUUC   1045 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100780919 (LOC100780919), transcript variant X2, mRNA	uncharacterized LOC100780919(LOC100780919)	coding protein	psRNATarget
XM_006575168.2	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   **|||||=||||||||*|||| targets:1025   UAAGAUGGACUCAGGAGCUUC   1045 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100780919 (LOC100780919), transcript variant X1, mRNA	uncharacterized LOC100780919(LOC100780919)	coding protein	psRNATarget
XM_006587152.2	ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1   **|||||=||||||||*|||| targets:1092   UAAGAUGGACUCAGGAACUUC   1112 Target Full Sequence	2.5	PREDICTED: Glycine max protein PHR1-LIKE 1-like (LOC102668541), transcript variant X1, mRNA	protein PHR1-LIKE 1-like(LOC102668541)	coding protein	psRNATarget