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BaseInfo

ncRNA ID novel_gma_miR5182
Species Glycine max
Class miRNA
Genome position Chr8:47448456-47448556 [-]
Reference genome Glycine_max_v2.0
Source SRR3160566
Length 21
Mature sequence(if miRNA) 1 - GAAGGUCCUGAGUUCAUCUCC - 21
Stem-loop(if miRNA) --    AAU    C                  CUAUAAU       GUG    U
  AGAU   CUCA GACCUUUUGCACCCUGGU       GAAGUUG   GAGA G
  ||||   |||| ||||||||||||||||||       |||||||   |||| A
  UCUA   GAGU CUGGAAGAUGUGGGAUUA       UUUCAGU   CUCU A
CC    CUU    C                  ------U       --A    C
Stem-loop sequence AGAUAAUCUCACGACCUUUUGCACCCUGGUCUAUAAUGAAGUUGGUGGAGAUGAACUCUCAUGACUUUUAUUAGGGUGUAGAAGGUCCUGAGUUCAUCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KJ607990.1
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  ||||||||*|||||||||||=
targets:172   GGAGAUGACCUCAGGACCUUU   192

2.5 Glycine max clone Glyma18g53680 FT1a mRNA, complete cds NA coding protein psRNATarget
FJ573245.1
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  ||||||||*|||||||||||=
targets:172   GGAGAUGACCUCAGGACCUUU   192

2.5 Glycine max twin sister of FT-like protein 2 (TSF2) mRNA, complete cds NA coding protein psRNATarget
NM_001254175.1
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  ||||||||*|||||||||||=
targets:210   GGAGAUGACCUCAGGACCUUU   230

2.5 Glycine max protein TWIN SISTER of FT-like (LOC100815008), mRNA protein TWIN SISTER of FT-like(LOC100815008) coding protein psRNATarget
AB550120.1
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  ||||||||*|||||||||||=
targets:210   GGAGAUGACCUCAGGACCUUU   230

2.5 Glycine max GmFT1a mRNA for flowering locus T, complete cds NA coding protein psRNATarget
XM_006575169.2
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  **|||||=||||||||*||||
targets:1025   UAAGAUGGACUCAGGAGCUUC   1045

2.5 PREDICTED: Glycine max uncharacterized LOC100780919 (LOC100780919), transcript variant X2, mRNA uncharacterized LOC100780919(LOC100780919) coding protein psRNATarget
XM_006575168.2
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  **|||||=||||||||*||||
targets:1025   UAAGAUGGACUCAGGAGCUUC   1045

2.5 PREDICTED: Glycine max uncharacterized LOC100780919 (LOC100780919), transcript variant X1, mRNA uncharacterized LOC100780919(LOC100780919) coding protein psRNATarget
XM_006587152.2
ncRNA:21   CCUCUACUUGAGUCCUGGAAG   1
  **|||||=||||||||*||||
targets:1092   UAAGAUGGACUCAGGAACUUC   1112

2.5 PREDICTED: Glycine max protein PHR1-LIKE 1-like (LOC102668541), transcript variant X1, mRNA protein PHR1-LIKE 1-like(LOC102668541) coding protein psRNATarget