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BaseInfo

ncRNA ID novel_gma_miR5177
Species Glycine max
Class miRNA
Genome position Chr11:9977037-9977131 [-]
Reference genome Glycine_max_v2.0
Source SRR3160566
Length 23
Mature sequence(if miRNA) 1 - CAUGUGUAGAGAUUCCUAGAGGA - 23
Stem-loop(if miRNA) --     CU   ----          GA    ---G     AG UA     U
  CUCUA  GGA    CUACACAUGU  GCUU    CUUAA  G  AUGGA G
  |||||  |||    ||||||||||  ||||    |||||  |  |||||
  GAGAU  CCU    GAUGUGUACA  UGAG    GGAUU  U  UAUUU G
AG     --   UAGA          AG    AUUA     AA GC     A
Stem-loop sequence CUCUACUGGACUACACAUGUGAGCUUGCUUAAAGGUAAUGGAUGGAUUUAUCGUAAUUAGGAUUAGAGUGAACAUGUGUAGAGAUUCCUAGAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779383.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:352   UAGUCUUGGAAUUUCUACACAUG   374

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X11, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779382.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:355   UAGUCUUGGAAUUUCUACACAUG   377

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X10, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779380.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:402   UAGUCUUGGAAUUUCUACACAUG   424

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X8, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779379.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:405   UAGUCUUGGAAUUUCUACACAUG   427

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X7, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779381.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:457   UAGUCUUGGAAUUUCUACACAUG   479

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X9, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_006585992.2
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:861   UAGUCUUGGAAUUUCUACACAUG   883

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X13, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779384.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:859   UAGUCUUGGAAUUUCUACACAUG   881

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X12, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779377.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:811   UAGUCUUGGAAUUUCUACACAUG   833

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X5, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779375.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:860   UAGUCUUGGAAUUUCUACACAUG   882

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X1, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779378.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:890   UAGUCUUGGAAUUUCUACACAUG   912

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X6, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_014779376.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:1477   UAGUCUUGGAAUUUCUACACAUG   1499

2.5 PREDICTED: Glycine max fimbrin-5-like (LOC100819904), transcript variant X4, mRNA fimbrin-5-like(LOC100819904) coding protein psRNATarget
XM_006575635.2
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:1626   UAGUCUUGGAAUUUCUACACAUG   1648

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100810854), transcript variant X2, mRNA fimbrin-1-like(LOC100810854) coding protein psRNATarget
XM_003519559.3
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:1776   UAGUCUUGGAAUUUCUACACAUG   1798

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100810854), transcript variant X3, mRNA fimbrin-1-like(LOC100810854) coding protein psRNATarget
XM_003544679.3
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:1630   UAGUCUUGGAAUUUCUACACAUG   1652

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100794850), transcript variant X2, mRNA fimbrin-1-like(LOC100794850) coding protein psRNATarget
XM_006595645.2
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:1796   UAGUCUUGGAAUUUCUACACAUG   1818

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100794850), transcript variant X1, mRNA fimbrin-1-like(LOC100794850) coding protein psRNATarget
XM_014770699.1
ncRNA:23   AGGAGAUCCUUAGAGAUGUGUAC   1
  |**|||*|||||=||||||||||
targets:2060   UAGUCUUGGAAUUUCUACACAUG   2082

2.5 PREDICTED: Glycine max fimbrin-1-like (LOC100810854), transcript variant X1, mRNA fimbrin-1-like(LOC100810854) coding protein psRNATarget
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