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BaseInfo

ncRNA ID novel_gma_miR5171
Species Glycine max
Class miRNA
Genome position Chr19:45546893-45546999 [+]
Reference genome Glycine_max_v2.0
Source SRR3160566
Length 24
Mature sequence(if miRNA) 1 - CCUCUCCAUUUGCUAAUCAUUAGU - 24
Stem-loop(if miRNA) --C         U   A         -          UGUC       ----    U
   CUCUCCAUU GCU AUCAUUAGU AAUUUGUAGA    CUCUCAU    CUUU G
   ||||||||| ||| ||||||||| ||||||||||    |||||||    ||||
   GAGAGGUAA CGA UGGUAAUCG UUAAACAUCU    GAGAGUA    GAAG G
CUC         U   C         A          --UU       UAUU    A
Stem-loop sequence CCUCUCCAUUUGCUAAUCAUUAGUAAUUUGUAGAUGUCCUCUCAUCUUUUGGAGAAGUUAUAUGAGAGUUUCUACAAAUUAGCUAAUGGUCAGCUAAUGGAGAGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006592028.2
ncRNA:24   UGAUUACUAAUCGUUUACCUCUCC   1
  ||*|=|*|*||||||||||||||*
targets:13   ACAAGUCACUAGCAAAUGGAGAGU   36

3.0 PREDICTED: Glycine max uncharacterized LOC102670203 (LOC102670203), mRNA uncharacterized LOC102670203(LOC102670203) coding protein psRNATarget