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BaseInfo

ncRNA ID	ath-miR169a-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:4358994-4359219 [-]
Reference genome	TAIR10
Source	miRBase
Length	20
Mature sequence(if miRNA)	18 - GGCAAGUUGUCCUUGGCUAC - 37
Stem-loop(if miRNA)	-           C         UG           -----     GA    UCUUUAUACUCUAUUAAGACAAUUUAGUUUCAAACUUUUUUUUUUUUUUUUUUUUGAAG GUGACG AAAGUAGUGUG AGCCAAGGA  ACUUGCCGAUU     UAAAU  UCUU                                                           G |||||| ||||||||||| |||||||||  |||||||||||     |||||  |||| CGCUGU UUUCAUUGCAC UCGGUUCCU  UGAACGGCUAG     UGAAA  AAGA                                                           A       G           A         GU           UACAA     --    AAAACCAAAAUAUAUAGAACAUAAAAUAUGCCUUAUUAUAUAGGAUUAAAGAAGGACUU
Stem-loop sequence	GUGACGAAAGUAGUGUGCAGCCAAGGAUGACUUGCCGAUUUAAAUGAUCUUUCUUUAUACUCUAUUAAGACAAUUUAGUUUCAAACUUUUUUUUUUUUUUUUUUUUGAAGGAUUCAGGAAGAAAUUAGGAUAUAUUAUUCCGUAUAAAAUACAAGAUAUAUAAAACCAAAAAGAAAAAGUAACAUGAUCGGCAAGUUGUCCUUGGCUACACGUUACUUUGUGUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT010364.1	ncRNA:20   CAUCGGUUCCUGUUGAACGG   1   *||*|||||||||||||||* targets:1342   AUAUCCAAGGACAACUUGCA   1361 Target Full Sequence	2.0	Arabidopsis thaliana At2g40840 mRNA, complete cds	NA	coding protein	psRNATarget
AY081315.1	ncRNA:20   CAUCGGUUCCUGUUGAACGG   1   *||*|||||||||||||||* targets:1391   AUAUCCAAGGACAACUUGCA   1410 Target Full Sequence	2.0	Arabidopsis thaliana 4-alpha-glucanotransferase (At2g40840) mRNA, complete cds	NA	coding protein	psRNATarget
NM_129647.4	ncRNA:20   CAUCGGUUCCUGUUGAACGG   1   *||*|||||||||||||||* targets:1600   AUAUCCAAGGACAACUUGCA   1619 Target Full Sequence	2.0	Arabidopsis thaliana disproportionating enzyme 2 (DPE2), mRNA	disproportionating enzyme 2(DPE2)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:12202040 "Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002).
3	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
4	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
5	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
6	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).