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BaseInfo

ncRNA ID novel_gma_miR5101
Species Glycine max
Class miRNA
Genome position Chr20:44028314-44028380 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 24
Mature sequence(if miRNA) 1 - AGAAGAUUCUUCCGGUAGAACAAA - 24
Stem-loop(if miRNA) --            C          ---     UC
  AGAAGAUUCUUC GGUAGAACAA   AUUCU  C
  |||||||||||| ||||||||||   |||||
  UCUUCUAAGAAG CCAUCUUGUU   UAAGA  G
CU            U          AAA     UG
Stem-loop sequence AGAAGAUUCUUCCGGUAGAACAAAUUCUUCCGGUAGAAUAAAUUGUUCUACCUGAAGAAUCUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602627.2
ncRNA:24   AAACAAGAUGGCCUUCUUAGAAGA   1
  ***|||||*|=||||||||||||*
targets:2132   AAGGUUCUUCUGGAAGAAUCUUCC   2155

3.0 PREDICTED: Glycine max probable WRKY transcription factor 33 (LOC100792833), transcript variant X2, mRNA probable WRKY transcription factor 33(LOC100792833) coding protein psRNATarget
XM_014771244.1
ncRNA:24   AAACAAGAUGGCCUUCUUAGAAGA   1
  ***|||||*|=||||||||||||*
targets:2134   AAGGUUCUUCUGGAAGAAUCUUCC   2157

3.0 PREDICTED: Glycine max probable WRKY transcription factor 33 (LOC100792833), transcript variant X1, mRNA probable WRKY transcription factor 33(LOC100792833) coding protein psRNATarget