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BaseInfo

ncRNA ID novel_gma_miR5084
Species Glycine max
Class miRNA
Genome position Chr18:43488691-43488734 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 21
Mature sequence(if miRNA) 24 - UUUGGACUUGUGAUGGGUGUG - 44
Stem-loop(if miRNA) --U    U   G          
   GCCU UCA CAAGUUCAAGU
   |||| ||| ||||||||||G
   UGGG AGU GUUCAGGUUUU
GUG    U   -          
Stem-loop sequence UGCCUUUCAGCAAGUUCAAGUGUUUUGGACUUGUGAUGGGUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006594586.2
ncRNA:21   GUGUGGG---UAGUGUUCAGGUUU   1
  =*|||||---||||||||||||||
targets:715   UUCACCCGGCAUCACAAGUCCAAA   738

3.0 PREDICTED: Glycine max BTB/POZ domain-containing protein At3g22104 (LOC100806684), mRNA BTB/POZ domain-containing protein At3g22104(LOC100806684) coding protein psRNATarget
XM_014767826.1
ncRNA:21   GUGUGG---GUAGUGUUCAGGUUU   1
  =*||||---|||||||||||||||
targets:472   UUCACCAGGCAUCACAAGUCCAAA   495

3.0 PREDICTED: Glycine max BTB/POZ domain-containing protein At3g22104-like (LOC100779985), mRNA BTB/POZ domain-containing protein At3g22104-like(LOC100779985) coding protein psRNATarget
BT093727.1
ncRNA:21   GUGUGGG---UAGUGUUCAGGUUU   1
  =*|||||---||||||||||||||
targets:314   UUCACCCGGCAUCACAAGUCCAAA   337

3.0 Soybean clone JCVI-FLGm-14C4 unknown mRNA NA coding protein psRNATarget
XM_003550864.3
ncRNA:21   GUGUGGGUAGUGUUCAGGUUU   1
  ===|=|*||||||||||||||
targets:770   UGUAUCAAUCACAAGUCCAAA   790

3.0 PREDICTED: Glycine max VAN3-binding protein-like (LOC100800033), mRNA VAN3-binding protein-like(LOC100800033) coding protein psRNATarget