ncRNA ID | novel_gma_miR5074 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:42557168-42557290 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR2968978 |
Length | 24 |
Mature sequence(if miRNA) | 100 - UUUUAGGGAACCGUUAGAGAUGAC - 123 |
Stem-loop(if miRNA) |
--         A  GU   A    ACGCUAUCGCUAUGAGAAGACACGUGAAUCCGCUUAGA   UUUUAGGGA CC  UAG GAUG                                      G   ||||||||| ||  ||| ||||   GAGAUUCCU GG  UGU GUAC                                      G AA         A  AA   -    AAGUAAGAUUGGGGGUUAACACUAUUUGAGUAGGGAAU |
Stem-loop sequence | UUUUAGGGAACCGUUAGAGAUGACGCUAUCGCUAUGAGAAGACACGUGAAUCCGCUUAGAGGUAAGGGAUGAGUUUAUCACAAUUGGGGGUUAGAAUGAACAUGUGUAAGGAUCCUUAGAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014765974.1 |
|
1.5 | PREDICTED: Glycine max protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC100816820), transcript variant X2, mRNA | protein ROOT PRIMORDIUM DEFECTIVE 1-like(LOC100816820) | coding protein | psRNATarget | |||||||||
XM_014765973.1 |
|
1.5 | PREDICTED: Glycine max protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC100816820), transcript variant X1, mRNA | protein ROOT PRIMORDIUM DEFECTIVE 1-like(LOC100816820) | coding protein | psRNATarget |