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BaseInfo

ncRNA ID novel_gma_miR5074
Species Glycine max
Class miRNA
Genome position Chr10:42557168-42557290 [-]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 24
Mature sequence(if miRNA) 100 - UUUUAGGGAACCGUUAGAGAUGAC - 123
Stem-loop(if miRNA) --         A  GU   A    ACGCUAUCGCUAUGAGAAGACACGUGAAUCCGCUUAGA
  UUUUAGGGA CC  UAG GAUG                                      G
  ||||||||| ||  ||| ||||
  GAGAUUCCU GG  UGU GUAC                                      G
AA         A  AA   -    AAGUAAGAUUGGGGGUUAACACUAUUUGAGUAGGGAAU
Stem-loop sequence UUUUAGGGAACCGUUAGAGAUGACGCUAUCGCUAUGAGAAGACACGUGAAUCCGCUUAGAGGUAAGGGAUGAGUUUAUCACAAUUGGGGGUUAGAAUGAACAUGUGUAAGGAUCCUUAGAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765974.1
ncRNA:24   CAG-UAGAGAUUGCCAAGGGAUUUU   1
  *||-|*||||||||||||||||*||
targets:2173   CUCUAACUCUAACGGUUCCCUAUAA   2197

1.5 PREDICTED: Glycine max protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC100816820), transcript variant X2, mRNA protein ROOT PRIMORDIUM DEFECTIVE 1-like(LOC100816820) coding protein psRNATarget
XM_014765973.1
ncRNA:24   CAG-UAGAGAUUGCCAAGGGAUUUU   1
  *||-|*||||||||||||||||*||
targets:2180   CUCUAACUCUAACGGUUCCCUAUAA   2204

1.5 PREDICTED: Glycine max protein ROOT PRIMORDIUM DEFECTIVE 1-like (LOC100816820), transcript variant X1, mRNA protein ROOT PRIMORDIUM DEFECTIVE 1-like(LOC100816820) coding protein psRNATarget