Search result

BaseInfo

ncRNA ID	novel_gma_miR5072
Species	Glycine max
Class	miRNA
Genome position	Chr1:42821176-42821219 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2968978
Length	20
Mature sequence(if miRNA)	25 - AAACCGAUGUAGAAUGGUAU - 44
Stem-loop(if miRNA)	--                 AUC   GCCAUUCUACAUCGGUU   A   |||||||||||||||||   UGGUAAGAUGUAGCCAA   G UA                 AAA
Stem-loop sequence	GCCAUUCUACAUCGGUUAUCAGAAAAACCGAUGUAGAAUGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003528063.3	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   =|=|||||||=||||||||| targets:527   GUGCCAUUCUGCAUCGGUUU   546 Target Full Sequence	2.5	PREDICTED: Glycine max snurportin-1 (LOC100801927), mRNA	snurportin-1(LOC100801927)	coding protein	psRNATarget
XM_014767461.1	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   **|=|||||||||||||||* targets:450   CAAUCAUUCUACAUCGGUUA   469 Target Full Sequence	3.0	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_006598094.2	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   ||**|||||||||||||||* targets:846   AUUGCAUUCUACAUCGGUUC   865 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   ||**|||||||||||||||* targets:959   AUUGCAUUCUACAUCGGUUC   978 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   ||**|||||||||||||||* targets:1119   AUUGCAUUCUACAUCGGUUC   1138 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   ||**|||||||||||||||* targets:1396   AUUGCAUUCUACAUCGGUUC   1415 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1   ||**|||||||||||||||* targets:1559   AUUGCAUUCUACAUCGGUUC   1578 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget