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BaseInfo

ncRNA ID novel_gma_miR5072
Species Glycine max
Class miRNA
Genome position Chr1:42821176-42821219 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 20
Mature sequence(if miRNA) 25 - AAACCGAUGUAGAAUGGUAU - 44
Stem-loop(if miRNA) --                 AUC
  GCCAUUCUACAUCGGUU   A
  |||||||||||||||||
  UGGUAAGAUGUAGCCAA   G
UA                 AAA
Stem-loop sequence GCCAUUCUACAUCGGUUAUCAGAAAAACCGAUGUAGAAUGGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003528063.3
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  =|=|||||||=|||||||||
targets:527   GUGCCAUUCUGCAUCGGUUU   546

2.5 PREDICTED: Glycine max snurportin-1 (LOC100801927), mRNA snurportin-1(LOC100801927) coding protein psRNATarget
XM_014767461.1
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  **|=|||||||||||||||*
targets:450   CAAUCAUUCUACAUCGGUUA   469

3.0 PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA putative dual specificity protein phosphatase DSP8(LOC100787468) coding protein psRNATarget
XM_006598094.2
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  ||**|||||||||||||||*
targets:846   AUUGCAUUCUACAUCGGUUC   865

3.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768221.1
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  ||**|||||||||||||||*
targets:959   AUUGCAUUCUACAUCGGUUC   978

3.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768217.1
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  ||**|||||||||||||||*
targets:1119   AUUGCAUUCUACAUCGGUUC   1138

3.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768216.1
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  ||**|||||||||||||||*
targets:1396   AUUGCAUUCUACAUCGGUUC   1415

3.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768212.1
ncRNA:20   UAUGGUAAGAUGUAGCCAAA   1
  ||**|||||||||||||||*
targets:1559   AUUGCAUUCUACAUCGGUUC   1578

3.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget