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BaseInfo

ncRNA ID novel_gma_miR5070
Species Glycine max
Class miRNA
Genome position Chr17:32464357-32464415 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 24
Mature sequence(if miRNA) 1 - AUUAGAAUCGAUGUAGAAGGCCUU - 24
Stem-loop(if miRNA) ---AU       G   U     GC UUUUU
     UAGAAUC AUG AGAAG  C     U
     ||||||| ||| |||||  |     U
     GUUUUAG UAC UCUUC  G     A
UGUAC       A   -     UA UGAUG
Stem-loop sequence AUUAGAAUCGAUGUAGAAGGCCUUUUUUUAGUAGUGAUCUUCUCAUAGAUUUUGCAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539359.3
ncRNA:24   UUCCGGAAGAUGUAGCUAAGAUUA   1
  |||*||||||||||||=|||||||
targets:2684   AAGUCCUUCUACAUCGGUUCUAAU   2707

1.5 PREDICTED: Glycine max MLO-like protein 6 (LOC100776714), mRNA MLO-like protein 6(LOC100776714) coding protein psRNATarget
XM_006588741.2
ncRNA:24   UUCCGGAAGAUGUAGCUAAGAUUA   1
  ****=*|||||||||||||||||*
targets:2872   UCACUAUUCUACAUCGAUUCUAAC   2895

2.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_014763017.1
ncRNA:24   UUCCGGAAGAUGUAGCUAAGAUUA   1
  ****=*|||||||||||||||||*
targets:2968   UCACUAUUCUACAUCGAUUCUAAC   2991

2.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget