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BaseInfo

ncRNA ID novel_gma_miR5062
Species Glycine max
Class miRNA
Genome position Chr16:29288370-29288522 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 21
Mature sequence(if miRNA) 133 - UAAAUUAUAAAAAUAGUAGGU - 153
Stem-loop(if miRNA) --A     G          A    A  UA  UU     -      UAGAUAUGUAUU   -  AUUUUAGGCCCACGUAAAA
   UAUUA UUUUUGUAAU UUAG CA  AG  AAUAU UAUCUU            UGU AA                   U
   ||||| |||||||||| |||| ||  ||  ||||| ||||||            ||| ||
   AUGAU AAAAAUAUUA AAUC GU  UC  UUAUA AUAGAA            ACU UU                   U
UGG     -          -    -  UG  --     U      ----UAAAUUAA   U  AGUGAAUGGUCUUAUAUAU
Stem-loop sequence AUAUUAGUUUUUGUAAUAUUAGACAUAAGUUAAUAUUAUCUUUAGAUAUGUAUUUGUAAAUUUUAGGCCCACGUAAAAUUUAUAUAUUCUGGUAAGUGAUUUUCAAAUUAAAUAAGAUAUAUAUUCUGUUGCUAAAUUAUAAAAAUAGUAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006578352.2
ncRNA:21   UGGAUGAUAAAAAUAUUAAAU   1
  |=*||=|*|||||||||||||
targets:731   AUGUAUUUUUUUUAUAAUUUA   751

3.0 PREDICTED: Glycine max T-complex protein 1 subunit eta-like (LOC102661973), mRNA T-complex protein 1 subunit eta-like(LOC102661973) coding protein psRNATarget