Search result

BaseInfo

ncRNA ID novel_gma_miR5039
Species Glycine max
Class miRNA
Genome position Chr10:18460849-18460910 [+]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 20
Mature sequence(if miRNA) 43 - UUUGAAUGUAGUGUCUGGUU - 62
Stem-loop(if miRNA) --     UG A   A        C      A
  CCAGA  U ACA UCAAAGAU GUUAUU U
  |||||  | ||| |||||||| ||||||
  GGUCU  G UGU AGUUUCUA CAAUAA G
UU     GU A   A        C      U
Stem-loop sequence CCAGAUGUAACAAUCAAAGAUCGUUAUUAUGUAAUAACCAUCUUUGAAUGUAGUGUCUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006579815.2
ncRNA:20   UUGGUCUGUGAUGUAAGUUU   1
  *|||||*||||||||*||||
targets:2041   CACCAGUCACUACAUCCAAA   2060

2.5 PREDICTED: Glycine max uncharacterized LOC100794305 (LOC100794305), transcript variant X3, mRNA uncharacterized LOC100794305(LOC100794305) coding protein psRNATarget
XM_003525725.3
ncRNA:20   UUGGUCUGUGAUGUAAGUUU   1
  *|||||*||||||||*||||
targets:2043   CACCAGUCACUACAUCCAAA   2062

2.5 PREDICTED: Glycine max uncharacterized LOC100794305 (LOC100794305), transcript variant X1, mRNA uncharacterized LOC100794305(LOC100794305) coding protein psRNATarget