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BaseInfo

ncRNA ID novel_gma_miR5025
Species Glycine max
Class miRNA
Genome position Chr1:2209877-2209975 [-]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 24
Mature sequence(if miRNA) 1 - UUUUUUUGAUAUUGUAGAGGACGA - 24
Stem-loop(if miRNA) --     A     A   U       AAA           UA    C  UUU
  GUCCU UGCAA AUC AAAAAAA   UUCACAUUUAA  AGUU UC   G
  ||||| ||||| ||| |||||||   |||||||||||  |||| ||   U
  CAGGA AUGUU UAG UUUUUUU   AAGUGUGAAUU  UCAA AG   G
AG     G     A   -       -GA           -C    -  UUU
Stem-loop sequence GUCCUAUGCAAAAUCUAAAAAAAAAAUUCACAUUUAAUAAGUUCUCUUUGUGUUUGAAACUCUUAAGUGUGAAAGUUUUUUUGAUAUUGUAGAGGACGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006598254.2
ncRNA:24   AGCAGGAGAUGUUAUAGUUUUUUU   1
  ||--||||||||||*|||||||||
targets:191   UC--CCUCUACAAUUUCAAAAAAA   212

1.5 PREDICTED: Glycine max uncharacterized LOC100785349 (LOC100785349), partial mRNA uncharacterized LOC100785349(LOC100785349) coding protein psRNATarget
XM_006606109.2
ncRNA:24   AGCAGGAGAUGUUAUAGUUUUUUU   1
  *=****||||||||||=|||||||
targets:54   GUAGAAUCUACAAUAUUAAAAAAA   77

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF110 (LOC100802242), transcript variant X4, mRNA ethylene-responsive transcription factor ERF110(LOC100802242) coding protein psRNATarget
XM_006606106.2
ncRNA:24   AGCAGGAGAUGUUAUAGUUUUUUU   1
  *=****||||||||||=|||||||
targets:56   GUAGAAUCUACAAUAUUAAAAAAA   79

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF110 (LOC100802242), transcript variant X2, mRNA ethylene-responsive transcription factor ERF110(LOC100802242) coding protein psRNATarget