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BaseInfo

ncRNA ID novel_gma_miR5020
Species Glycine max
Class miRNA
Genome position Chr19:28747280-28747415 [-]
Reference genome Glycine_max_v2.0
Source SRR1295516;SRR1294476
Length 24
Mature sequence(if miRNA) 113 - AAGGACGUCGGGAUACAAUGCUCU - 136
Stem-loop(if miRNA) --    A        --     UGCU      GG -  UG C  UGGGACAUAAGUUUUUAUAUUAAUUGCA
  AAGG CGUCGGGA  UACAA    CUAAUA  A UG  A AG                            U
  |||| ||||||||  |||||    ||||||  | ||  | ||
  UUCC GCAGUUUU  AUGUU    GAUAAA  A AA  U AG                            G
UA    G        AA     --UU      -- C  UU -  UCACUCUAUUUUAUUUUAUCUGAUUGUA
Stem-loop sequence AAGGACGUCGGGAUACAAUGCUCUAAUAGGAUGUGACAGUGGGACAUAAGUUUUUAUAUUAAUUGCAUGAUGUUAGUCUAUUUUAUUUUAUCUCACUGAUUUAACAAAAUAGUUUUGUAAAUUUUGACGGCCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576330.2
ncRNA:24   UCUCGUAACAUAGGGCUGCAGGAA   1
  |||||=||||=|||||||||||||
targets:1985   AGAGCGUUGUGUCCCGACGUCCUU   2008

2.0 PREDICTED: Glycine max cytochrome P450 704C1-like (LOC100792128), mRNA cytochrome P450 704C1-like(LOC100792128) coding protein psRNATarget