Search result

BaseInfo

ncRNA ID novel_gma_miR5017
Species Glycine max
Class miRNA
Genome position Chr11:31126341-31126538 [-]
Reference genome Glycine_max_v2.0
Source SRR2968978
Length 24
Mature sequence(if miRNA) 175 - GAAGACGUCUUCCGUGAGAUUCCA - 198
Stem-loop(if miRNA) --                                                  A   UC                             A   A  A   A
  GAAGACGUCUUCCGUGAGAUUCCACAGAAGAAGCAUUCUUCCGCAGUUGU AUG  AACUGCGGAAGACAGCUUCUUCCGUGGAG CUC UG AAG C
  |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||| || |||
  CUUCUGCAGAAGGCACUCUAAGGUGUCUUCUUCGUAAGAAGGCGUCAACA UAU  UUGACGCCUUCUGUCGAAGAAGGCACCUC GAG GC UUC G
AC                                                  G   UC                             A   C  C   U
Stem-loop sequence GAAGACGUCUUCCGUGAGAUUCCACAGAAGAAGCAUUCUUCCGCAGUUGUAAUGUCAACUGCGGAAGACAGCUUCUUCCGUGGAGACUCAUGAAAGACGUCUUCCGCGAGACUCCACGGAAGAAGCUGUCUUCCGCAGUUCUUAUGACAACUGCGGAAGAAUGCUUCUUCUGUGGAAUCUCACGGAAGACGUCUUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003527348.3
ncRNA:24   ACCUUAGAGUGCCUUCUGCAGAAG   1
  *|||=||||=||||||||||||||
targets:2279   AGGAGUCUCGCGGAAGACGUCUUC   2302

1.0 PREDICTED: Glycine max uncharacterized LOC100788685 (LOC100788685), mRNA uncharacterized LOC100788685(LOC100788685) coding protein psRNATarget