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BaseInfo

ncRNA ID	novel_gma_miR5011
Species	Glycine max
Class	miRNA
Genome position	Chr8:43954896-43955044 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2968978
Length	20
Mature sequence(if miRNA)	1 - CUAUGAAGCACGGACACCCC - 20
Stem-loop(if miRNA)	--C               CCCCA CC    CCA   -CCU       U ACC      GACA   ACACCCGUACCGGA    UAUGAAGCACGGACA     G  CACC   GCC    UGCAGUG C   GACACC    CCG              U    |||||||||||||||     |  ||||   |||    ||||||| |   ||||||    |||              U    AUACUUCGUGCCUGU     C  GUGG   CGG    GUGUCAC G   CUGUGG    CAG              G AUC               ----A CU    --C   UACU       U CAC      ---A   UUUGUAUAGUUUGA
Stem-loop sequence	CUAUGAAGCACGGACACCCCAGCCCACCCCAGCCCCUUGCAGUGUCACCGACACCGACACCGACACCCGUACCGGAUUGAGUUUGAUAUGUUUGACAGGUGUCCACGUCACUGUGUCAUGGCCGGUGUCCAUGUCCGUGCUUCAUACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287415.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   |||||||||||||||||||| targets:927   GGGGUGUCCGUGCUUCAUAG   946 Target Full Sequence	0.0	Glycine max cDNA, clone: GMFL01-52-N04	NA	coding protein	psRNATarget
XM_006605697.2	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   ||*||||||||||||||||| targets:2525   GGAGUGUCCGUGCUUCAUAG   2544 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC102669551 (LOC102669551), mRNA	uncharacterized LOC102669551(LOC102669551)	coding protein	psRNATarget
XM_014762142.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   ||*||||||||||||||||| targets:1265   GGAGUGUCCGUGCUUCAUAG   1284 Target Full Sequence	1.0	PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC100783061), transcript variant X1, mRNA	tripeptidyl-peptidase 2-like(LOC100783061)	coding protein	psRNATarget
XM_014762143.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   ||*||||||||||||||||| targets:1027   GGAGUGUCCGUGCUUCAUAG   1046 Target Full Sequence	1.0	PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC100783061), transcript variant X2, mRNA	tripeptidyl-peptidase 2-like(LOC100783061)	coding protein	psRNATarget
XM_003520873.3	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   *|*||||||||||||||||| targets:221   AGAGUGUCCGUGCUUCAUAG   240 Target Full Sequence	1.0	PREDICTED: Glycine max NADPH-dependent pterin aldehyde reductase (LOC100801127), transcript variant X1, mRNA	NADPH-dependent pterin aldehyde reductase(LOC100801127)	coding protein	psRNATarget
XM_006576236.2	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   *|*||||||||||||||||| targets:223   AGAGUGUCCGUGCUUCAUAG   242 Target Full Sequence	1.0	PREDICTED: Glycine max NADPH-dependent pterin aldehyde reductase (LOC100801127), transcript variant X2, mRNA	NADPH-dependent pterin aldehyde reductase(LOC100801127)	coding protein	psRNATarget
XM_014777249.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   |*|||||||||||||*|||| targets:233   GAGGUGUCCGUGCUUGAUAG   252 Target Full Sequence	2.5	PREDICTED: Glycine max F-box-like/WD repeat-containing protein TBL1XR1 (LOC100792917), transcript variant X5, mRNA	F-box-like/WD repeat-containing protein TBL1XR1(LOC100792917)	coding protein	psRNATarget
XM_014777250.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   |*|||||||||||||*|||| targets:233   GAGGUGUCCGUGCUUGAUAG   252 Target Full Sequence	2.5	PREDICTED: Glycine max F-box-like/WD repeat-containing protein TBL1XR1 (LOC100792917), transcript variant X6, mRNA	F-box-like/WD repeat-containing protein TBL1XR1(LOC100792917)	coding protein	psRNATarget
XM_006603926.2	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:1346   UCGGUGUCGGUGCUUCAUAG   1365 Target Full Sequence	2.5	PREDICTED: Glycine max zinc transporter 5-like (LOC100803797), transcript variant X4, mRNA	zinc transporter 5-like(LOC100803797)	coding protein	psRNATarget
XM_003545133.3	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:1268   UCGGUGUCGGUGCUUCAUAG   1287 Target Full Sequence	2.5	PREDICTED: Glycine max probable polygalacturonase At3g15720 (LOC100787282), mRNA	probable polygalacturonase At3g15720(LOC100787282)	coding protein	psRNATarget
XM_003555906.3	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:929   UCGGUGUCGGUGCUUCAUAG   948 Target Full Sequence	2.5	PREDICTED: Glycine max kynurenine formamidase-like (LOC100801168), transcript variant X1, mRNA	kynurenine formamidase-like(LOC100801168)	coding protein	psRNATarget
BT091231.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **|||||||*|||||||||| targets:467   CCGGUGUCCAUGCUUCAUAG   486 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-7B1 unknown mRNA	NA	coding protein	psRNATarget
LQ242728.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:56   UCGGUGUCGGUGCUUCAUAG   75 Target Full Sequence	2.5	Sequence 8723 from Patent EP2985353	NA	coding protein	psRNATarget
HI410598.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:56   UCGGUGUCGGUGCUUCAUAG   75 Target Full Sequence	2.5	Sequence 8723 from Patent EP2074227	NA	coding protein	psRNATarget
JB171059.1	ncRNA:20   CCCCACAGGCACGAAGUAUC   1   **||||||*||||||||||| targets:56   UCGGUGUCGGUGCUUCAUAG   75 Target Full Sequence	2.5	Sequence 8723 from Patent EP2559767	NA	coding protein	psRNATarget