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BaseInfo

ncRNA ID	novel_gma_miR5006
Species	Glycine max
Class	miRNA
Genome position	Chr7:28903218-28903415 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2968978;SRR835766;SRR835767
Length	22
Mature sequence(if miRNA)	177 - UAAAAUCUGAAGGACAAAUAAU - 198
Stem-loop(if miRNA)	--           A              CU    GCUA                         G   UC    AAA    G   UAUA           G   UAUUUGUCCUU AGAUUUUACUGUUU  UUUU    AUAUGUAAAUAUAAAUGGUAUAAGG UAU  CGUA   ACAU GUA    UUUACUUCUAA A   ||||||||||| ||||||||||||||  ||||    ||||||||||||||||||||||||| |||  ||||   |||| |||    ||||||||||| U   AUAAACAGGAA UCUAAAAUGAUAAA  AAAG    UAUACAUUUAUAUUUAUUAUAUUCC AUA  GUAU   UGUA CAU    AAAUGGGGAUU U UA           G              AC    --AA                         G   CC    ACG    G   -UAA           G
Stem-loop sequence	UAUUUGUCCUUAAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUGGUAUAAGGGUAUUCCGUAAAAACAUGGUAUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAUUACGAUGUGCAUAUGCCAUAGCCUUAUAUUAUUUAUAUUUACAUAUAAGAAACAAAAUAGUAAAAUCUGAAGGACAAAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593805.2	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   |*|||||||||||||||||||| targets:1496   ACUAUUUGUCCUUCAGAUUUUA   1517 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006593804.2	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   |*|||||||||||||||||||| targets:1520   ACUAUUUGUCCUUCAGAUUUUA   1541 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006590933.2	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   =**||||||||||*|||||||| targets:1606   GGAAUUUGUCCUUGAGAUUUUA   1627 Target Full Sequence	1.5	PREDICTED: Glycine max UDP-galactose/UDP-glucose transporter 5B (LOC100804347), transcript variant X2, mRNA	UDP-galactose/UDP-glucose transporter 5B(LOC100804347)	coding protein	psRNATarget
XM_003539046.3	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   =**||||||||||*|||||||| targets:1705   GGAAUUUGUCCUUGAGAUUUUA   1726 Target Full Sequence	1.5	PREDICTED: Glycine max UDP-galactose/UDP-glucose transporter 5B (LOC100804347), transcript variant X1, mRNA	UDP-galactose/UDP-glucose transporter 5B(LOC100804347)	coding protein	psRNATarget
XM_014769354.1	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   *||||||||=|||||||||||= targets:28   CUUAUUUGUUCUUCAGAUUUUG   49 Target Full Sequence	2.5	PREDICTED: Glycine max probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (LOC100813207), transcript variant X2, mRNA	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770(LOC100813207)	coding protein	psRNATarget
XM_006578034.1	ncRNA:22   UAAUAAACAGGAAGUCUAAAAU   1   *||*|||*|||||||||||||= targets:4649   UUUUUUUAUCCUUCAGAUUUUG   4670 Target Full Sequence	3.0	PREDICTED: Glycine max myosin-15-like (LOC100804699), transcript variant X3, mRNA	myosin-15-like(LOC100804699)	coding protein	psRNATarget