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BaseInfo

ncRNA ID novel_gma_miR4985
Species Glycine max
Class miRNA
Genome position Chr10:12426120-12426203 [+]
Reference genome Glycine_max_v2.0
Source SRR1295516
Length 24
Mature sequence(if miRNA) 61 - CAAGUUGAUCCGUAUGACUCAUAC - 84
Stem-loop(if miRNA) --   -U              A    CCAUAACUAUUAUAUG
  GUG  UCGUACGGAUCAAC UGAU                A
  |||  |||||||||||||| ||||                U
  UAC  AGUAUGCCUAGUUG ACUA                C
CA   UC              A    GGCAUACGCAAUAUGC
Stem-loop sequence GUGUUCGUACGGAUCAACAUGAUCCAUAACUAUUAUAUGAUCCGUAUAACGCAUACGGAUCAAGUUGAUCCGUAUGACUCAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:24   CAUACUCAGUAUGCCUAGUUGAAC   1
  ||*|||**||||||||||||||||
targets:404   GUUUGAAGCAUACGGAUCAACUUG   427

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:24   CAUACUCAGUAUGCCUAGUUGAAC   1
  ||*|||**||||||||||||||||
targets:999   GUUUGAAGCAUACGGAUCAACUUG   1022

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:24   CAUACUCAGUAUGCCUAGUUGAAC   1
  |||**||*|*||||||||||||||
targets:1242   GUAAAAGCCUUACGGAUCAACUUG   1265

2.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget