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BaseInfo

ncRNA ID novel_gma_miR4977
Species Glycine max
Class miRNA
Genome position Chr16:12572398-12572461 [-]
Reference genome Glycine_max_v2.0
Source SRR2968974;SRR2968978;SRR835772;SRR835773
Length 24
Mature sequence(if miRNA) 41 - AAGUUAGAACAAUUCAAAGACGGU - 64
Stem-loop(if miRNA) --    U   ---  A              A  A
  AAGU AGA   AC AUUCAAAGACGGUU UU U
  |||| |||   || |||||||||||||| ||
  UUCG UCU   UG UAAGUUUCUGCCAA AA C
GA    -   GUA  A              A  G
Stem-loop sequence AAGUUAGAACAAUUCAAAGACGGUUAUUAUCGAAAAACCGUCUUUGAAUAGUAUGUCUGCUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT090346.1
ncRNA:24   UGGCAGAAACUUAACAAGAUUGAA   1
  *||*||*||*|||||||||||||*
targets:57   UCCUUCCUUCAAUUGUUCUAACUC   80

3.0 Soybean clone JCVI-FLGm-4C4 unknown mRNA NA coding protein psRNATarget
XM_003549452.3
ncRNA:24   UGGCAGAAACUUAACAAGAUUGAA   1
  *||*||*||*|||||||||||||*
targets:76   UCCUUCCUUCAAUUGUUCUAACUC   99

3.0 PREDICTED: Glycine max small nuclear ribonucleoprotein E (LOC100306304), mRNA small nuclear ribonucleoprotein E(LOC100306304) coding protein psRNATarget