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BaseInfo

ncRNA ID novel_gma_miR4970
Species Glycine max
Class miRNA
Genome position Chr10:12484454-12484508 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 24
Mature sequence(if miRNA) 1 - AAAAGAGGAGAGAGUCGUUAAGGU - 24
Stem-loop(if miRNA) A     -G     A     --      G
 AAAGA  GAGAG GUCGU  UAAGGU U
 |||||  ||||| |||||  |||||| U
 UUUUU  UUCUC CAGUA  GUUCCA G
G     AG     -     AA      G
Stem-loop sequence AAAAGAGGAGAGAGUCGUUAAGGUGUUGGACCUUGAAAUGACCUCUUGAUUUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245646.1
ncRNA:24   UGGAAUUGCUGAGAGAGGAGAAAA   1
  |*=|*|||*|||=|||||||||||
targets:213   AAUUAAACCACUUUCUCCUCUUUU   236

2.5 Glycine max cDNA, clone: GMFL01-36-J19 NA coding protein psRNATarget
XM_014762442.1
ncRNA:24   UGGAAUUGCUGAGAGAGGAGAAAA   1
  *=|||||*|=|||||||||||||*
targets:489   CUCUUAAAGGCUCUCUCCUCUUUC   512

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 24 (LOC100804981), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 24(LOC100804981) coding protein psRNATarget
BT096327.1
ncRNA:24   UGGAAUUGCUGAGAGAGGAGAAAA   1
  |||*|*||*||||||||||||||*
targets:180   ACCCUCACCACUCUCUCCUCUUUC   203

3.0 Soybean clone JCVI-FLGm-9L23 unknown mRNA NA coding protein psRNATarget
XM_003530550.3
ncRNA:24   UGGAAUUGCUGAGAGAGGAGAAAA   1
  |||*|*||*||||||||||||||*
targets:179   ACCCUCACCACUCUCUCCUCUUUC   202

3.0 PREDICTED: Glycine max uncharacterized LOC100807973 (LOC100807973), mRNA uncharacterized LOC100807973(LOC100807973) coding protein psRNATarget