Search result

BaseInfo

ncRNA ID novel_gma_miR4962
Species Glycine max
Class miRNA
Genome position Chr14:4067508-4067558 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 24
Mature sequence(if miRNA) 28 - UACGAUGAAUCUUUGAGGUCUGAG - 51
Stem-loop(if miRNA) --        G        -GA  UU
  CAGACUUU AAAGGUUU   GU  A
  |||||||| ||||||||   ||  G
  GUCUGGAG UUUCUAAG   CA  U
GA        -        UAG  UC
Stem-loop sequence CAGACUUUGAAAGGUUUGAGUUUAGUCUACGAUGAAUCUUUGAGGUCUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775438.1
ncRNA:24   GAGUCUGGAGUUUCUAAGUAGCAU   1
  *||||=||||||||||||||||||
targets:1584   AUCAGGCCUCAAAGAUUCAUCGUA   1607

1.0 PREDICTED: Glycine max E2F transcription factor-like E2FE (LOC100806151), transcript variant X4, mRNA E2F transcription factor-like E2FE(LOC100806151) coding protein psRNATarget
XM_003525109.3
ncRNA:24   GAGUCUGGAGUUUCUAAGUAGCAU   1
  *||||=||||||||||||||||||
targets:2010   AUCAGGCCUCAAAGAUUCAUCGUA   2033

1.0 PREDICTED: Glycine max E2F transcription factor-like E2FE (LOC100806151), transcript variant X3, mRNA E2F transcription factor-like E2FE(LOC100806151) coding protein psRNATarget
XM_014775437.1
ncRNA:24   GAGUCUGGAGUUUCUAAGUAGCAU   1
  *||||=||||||||||||||||||
targets:3334   AUCAGGCCUCAAAGAUUCAUCGUA   3357

1.0 PREDICTED: Glycine max E2F transcription factor-like E2FE (LOC100806151), transcript variant X2, mRNA E2F transcription factor-like E2FE(LOC100806151) coding protein psRNATarget
XM_014775436.1
ncRNA:24   GAGUCUGGAGUUUCUAAGUAGCAU   1
  *||||=||||||||||||||||||
targets:3754   AUCAGGCCUCAAAGAUUCAUCGUA   3777

1.0 PREDICTED: Glycine max E2F transcription factor-like E2FE (LOC100806151), transcript variant X1, mRNA E2F transcription factor-like E2FE(LOC100806151) coding protein psRNATarget