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BaseInfo

ncRNA ID novel_gma_miR4956
Species Glycine max
Class miRNA
Genome position Chr10:12849852-12849933 [-]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 21
Mature sequence(if miRNA) 62 - AGUGAUCUGGACUAGACGGAA - 82
Stem-loop(if miRNA) --        G       C           - -      AUU
  AGUGAUCU GACUAGA GGAAUCCGAGG G AGAUUU   U
  |||||||| ||||||| ||||||||||| | ||||||
  UCACUAGA CUGAUCU UCUUAGGUUCU C UUUAAA   C
UC        A       C           G G      GGA
Stem-loop sequence AGUGAUCUGGACUAGACGGAAUCCGAGGGAGAUUUAUUUCAGGAAAUUUGCGUCUUGGAUUCUCUCUAGUCAAGAUCACUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HM775856.1
ncRNA:21   AAGGCAGAUCAGGUCUAGUGA   1
  **||*|||||||*||||||||
targets:188   ACCCUUCUAGUCAAGAUCACU   208

2.5 Glycine max babyboom 1 mRNA, complete cds NA coding protein psRNATarget
NM_001250170.1
ncRNA:21   AAGGCAGAUCAGGUCUAGUGA   1
  **||*|||||||*||||||||
targets:188   ACCCUUCUAGUCAAGAUCACU   208

2.5 Glycine max babyboom 1 (LOC100526744), mRNA babyboom 1(LOC100526744) coding protein psRNATarget
XM_003552414.3
ncRNA:21   AAGGCAGAUCAGGUCUAGUGA   1
  **||*|||||||*||||||||
targets:336   ACCCUUCUAGUCAAGAUCACU   356

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor BBM1 (LOC100797584), mRNA AP2-like ethylene-responsive transcription factor BBM1(LOC100797584) coding protein psRNATarget
XM_006586582.2
ncRNA:21   AAGGCAGAUCAGGUCUAGUGA   1
  **||*|||||||*||||||||
targets:350   ACCCUUCUAGUCAAGAUCACU   370

2.5 PREDICTED: Glycine max babyboom 1 (LOC100526744), transcript variant X1, mRNA babyboom 1(LOC100526744) coding protein psRNATarget