Search result

BaseInfo

ncRNA ID	novel_gma_miR4905
Species	Glycine max
Class	miRNA
Genome position	Chr1:8577664-8577765 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2968974
Length	24
Mature sequence(if miRNA)	1 - AUGUGUUACAUACUAAGACGGUCG - 24
Stem-loop(if miRNA)	----     UU               C GA GUAUAA     AUG       U     AUGUG  ACAUACUAAGACGGU G  U      GAUUG   UAGAAUG G     |||||  ||||||||||||||| |  |      |||||   ||||||| U     UACGC  UGUAUGAUUCUGUCA C  A      CUAGU   AUCUUAC U CUUA     -U               A AG --AGUG     AGA       A
Stem-loop sequence	AUGUGUUACAUACUAAGACGGUCGGAUGUAUAAGAUUGAUGUAGAAUGUGUUACAUUCUAAGAUGAUCGUGAAGACAACUGUCUUAGUAUGUUCGCAUAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014764114.1	ncRNA:24   GCUGGCAGAAUCAUACAUUGUGUA   1   =*||||||||||*||||||||||| targets:2004   UAACCGUCUUAGAAUGUAACACAU   2027 Target Full Sequence	1.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764113.1	ncRNA:24   GCUGGCAGAAUCAUACAUUGUGUA   1   =*||||||||||*||||||||||| targets:2012   UAACCGUCUUAGAAUGUAACACAU   2035 Target Full Sequence	1.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_006591004.2	ncRNA:24   GCUGGCAGAAUCAUACAUUGUGUA   1   =*||||||||||*||||||||||| targets:2068   UAACCGUCUUAGAAUGUAACACAU   2091 Target Full Sequence	1.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764112.1	ncRNA:24   GCUGGCAGAAUCAUACAUUGUGUA   1   =*||||||||||*||||||||||| targets:2084   UAACCGUCUUAGAAUGUAACACAU   2107 Target Full Sequence	1.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget