Search result

BaseInfo

ncRNA ID novel_gma_miR4880
Species Glycine max
Class miRNA
Genome position Chr9:37344993-37345061 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974;SRR2968978;SRR835758;SRR835759;SRR835761;SRR835763;SRR835766;SRR835767;SRR835768;SRR835771;SRR835772;SRR835773
Length 23
Mature sequence(if miRNA) 1 - UUUGAAUUUUUAAGACUGGUAAU - 23
Stem-loop(if miRNA) -          U   ACUG      A      UG
 UUUGAAUUUU AAG    GUAAUC AUUACA  U
 |||||||||| |||    |||||| ||||||  U
 AAAUUUAAAG UUC    CAUUAG UAAUGU  C
U          U   -ACA      C      CU
Stem-loop sequence UUUGAAUUUUUAAGACUGGUAAUCAAUUACAUGUUCUCUGUAAUCGAUUACACACUUUGAAAUUUAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003548548.3
ncRNA:23   UAAUGGUCAGAAUUUUUAAGUUU   1
  =||*||**|||||||||||||||
targets:3191   GUUCCCCUUCUUAAAAAUUCAAA   3213

2.0 PREDICTED: Glycine max receptor-like protein kinase 5 (LOC100820277), mRNA receptor-like protein kinase 5(LOC100820277) coding protein psRNATarget