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BaseInfo

ncRNA ID novel_gma_miR4857
Species Glycine max
Class miRNA
Genome position Chr6:26594475-26594570 [-]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 24
Mature sequence(if miRNA) 73 - AGAACAAGCAUAGUUAGGUUCCUU - 96
Stem-loop(if miRNA) --   ACA   A  G          UAGUGGGCUUA         U   GGACA
  AGA   AGC UA UUAGGUUCCU           AUAUGGAAG GAG     A
  |||   ||| || ||||||||||           ||||||||| |||     G
  UCU   UCG GU GAUCCAGGGA           UAUACCUUC CUC     A
AA   -GA   A  A          -----------         -   AAGUU
Stem-loop sequence AGAACAAGCAUAGUUAGGUUCCUUAGUGGGCUUAAUAUGGAAGUGAGGGACAAGAUUGAACUCCUUCCAUAUAGGGACCUAGAUGAGCUAGUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779370.1
ncRNA:24   UUCCUUGGAUUGAUACGAACAAGA   1
  |***||=|||*|||||||||||||
targets:1755   ACACAAUCUAUCUAUGCUUGUUCU   1778

2.0 PREDICTED: Glycine max probable polyamine oxidase 2 (LOC100799631), transcript variant X2, mRNA probable polyamine oxidase 2(LOC100799631) coding protein psRNATarget
XM_003532021.3
ncRNA:24   UUCCUUGGAUUGAUACGAACAAGA   1
  |***||=|||*|||||||||||||
targets:1854   ACACAAUCUAUCUAUGCUUGUUCU   1877

2.0 PREDICTED: Glycine max probable polyamine oxidase 2 (LOC100799631), transcript variant X1, mRNA probable polyamine oxidase 2(LOC100799631) coding protein psRNATarget
AK287299.1
ncRNA:24   UUCCUUGGAUUGAUACGAACAAGA   1
  |***||=|||*|||||||||||||
targets:2890   ACACAAUCUAUCUAUGCUUGUUCU   2913

2.0 Glycine max cDNA, clone: GMFL01-49-B21 NA coding protein psRNATarget