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BaseInfo

ncRNA ID novel_gma_miR4847
Species Glycine max
Class miRNA
Genome position Chr5:14895836-14895922 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974;SRR835758;SRR835761;SRR835765;SRR835771
Length 22
Mature sequence(if miRNA) 1 - UUCUUUGCUGCCUCAGACGUCA - 22
Stem-loop(if miRNA) --    UUG  G  --       U   U   CCAAAUUUCUU    C   C
  UUCU   CU CC  UCAGACG CAU UGA           GGUG AGG C
  ||||   || ||  ||||||| ||| |||           |||| |||
  AAGG   GA GG  AGUCUGC GUG ACU           UCAC UUC U
AG    -UA  -  AU       U   C   -----------    C   U
Stem-loop sequence UUCUUUGCUGCCUCAGACGUCAUUUGACCAAAUUUCUUGGUGCAGGCCUUCUUCCACUUCACGUGUCGUCUGAUAGGAGAUGGAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014770986.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||||
targets:992   UGACGUCUGAGGCAGCAAAGAA   1013

0.0 PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X2, mRNA uncharacterized LOC106797154(LOC106797154) coding protein psRNATarget
XM_014770985.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||||
targets:1087   UGACGUCUGAGGCAGCAAAGAA   1108

0.0 PREDICTED: Glycine max uncharacterized LOC106797154 (LOC106797154), transcript variant X1, mRNA uncharacterized LOC106797154(LOC106797154) coding protein psRNATarget
XM_014776018.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:344   UGACGUCUGAGGCAGCAAAGGA   365

1.5 PREDICTED: Glycine max uncharacterized LOC106798841 (LOC106798841), mRNA uncharacterized LOC106798841(LOC106798841) coding protein psRNATarget
XM_014777033.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:458   UGACGUCUGAGGCAGCAAAGGA   479

1.5 PREDICTED: Glycine max uncharacterized LOC106799075 (LOC106799075), mRNA uncharacterized LOC106799075(LOC106799075) coding protein psRNATarget
XM_014770450.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:2   UGACGUCUGAGGCAGCAAAGGA   23

1.5 PREDICTED: Glycine max uncharacterized LOC106796841 (LOC106796841), mRNA uncharacterized LOC106796841(LOC106796841) coding protein psRNATarget
XM_014770488.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:1277   UGACGUCUGAGGCAGCAAAGGA   1298

1.5 PREDICTED: Glycine max uncharacterized LOC106796856 (LOC106796856), mRNA uncharacterized LOC106796856(LOC106796856) coding protein psRNATarget
XM_014773484.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:1325   UGACGUCUGAGGCAGCAAAGGA   1346

1.5 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X2, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_014773485.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:1414   UGACGUCUGAGGCAGCAAAGGA   1435

1.5 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X3, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_014773483.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||||||||||||||||||=|
targets:1821   UGACGUCUGAGGCAGCAAAGGA   1842

1.5 PREDICTED: Glycine max uncharacterized LOC102662694 (LOC102662694), transcript variant X1, mRNA uncharacterized LOC102662694(LOC102662694) coding protein psRNATarget
XM_003547409.3
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  |||=||||||||||||||||=|
targets:523   UGAUGUCUGAGGCAGCAAAGGA   544

2.5 PREDICTED: Glycine max uncharacterized LOC100789246 (LOC100789246), transcript variant X1, mRNA uncharacterized LOC100789246(LOC100789246) coding protein psRNATarget
XM_014762422.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  |||||*||||||||||||||=|
targets:756   UGACGCCUGAGGCAGCAAAGGA   777

2.5 PREDICTED: Glycine max uncharacterized LOC106794681 (LOC106794681), mRNA uncharacterized LOC106794681(LOC106794681) coding protein psRNATarget
XM_014761990.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:212   UGACAUCUGAGGCAGCAAAGGA   233

2.5 PREDICTED: Glycine max uncharacterized LOC106794548 (LOC106794548), transcript variant X2, mRNA uncharacterized LOC106794548(LOC106794548) coding protein psRNATarget
XM_014761988.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:212   UGACAUCUGAGGCAGCAAAGGA   233

2.5 PREDICTED: Glycine max uncharacterized LOC106794548 (LOC106794548), transcript variant X1, mRNA uncharacterized LOC106794548(LOC106794548) coding protein psRNATarget
XM_014771500.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:900   UGACAUCUGAGGCAGCAAAGGA   921

2.5 PREDICTED: Glycine max uncharacterized LOC102662230 (LOC102662230), transcript variant X2, mRNA uncharacterized LOC102662230(LOC102662230) coding protein psRNATarget
XM_014771499.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:900   UGACAUCUGAGGCAGCAAAGGA   921

2.5 PREDICTED: Glycine max uncharacterized LOC102662230 (LOC102662230), transcript variant X1, mRNA uncharacterized LOC102662230(LOC102662230) coding protein psRNATarget
XM_014770086.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:2230   UGACAUCUGAGGCAGCAAAGGA   2251

2.5 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X2, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770087.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:2230   UGACAUCUGAGGCAGCAAAGGA   2251

2.5 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X3, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770089.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:2143   UGACAUCUGAGGCAGCAAAGGA   2164

2.5 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X5, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770088.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:2150   UGACAUCUGAGGCAGCAAAGGA   2171

2.5 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X4, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770085.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  ||||*|||||||||||||||=|
targets:2230   UGACAUCUGAGGCAGCAAAGGA   2251

2.5 PREDICTED: Glycine max uncharacterized LOC102668239 (LOC102668239), transcript variant X1, mRNA uncharacterized LOC102668239(LOC102668239) coding protein psRNATarget
XM_014770569.1
ncRNA:22   ACUGCAGACUCCGUCGUUU-CUU   1
  |||||||||||||||||||-|||
targets:666   UGACGUCUGAGGCAGCAAAAGAA   688

3.0 PREDICTED: Glycine max uncharacterized LOC102664574 (LOC102664574), mRNA uncharacterized LOC102664574(LOC102664574) coding protein psRNATarget
XM_014774672.1
ncRNA:22   ACUGCAGACUCCGUCGUUU-CUU   1
  |||||||||||||||||||-|||
targets:957   UGACGUCUGAGGCAGCAAAUGAA   979

3.0 PREDICTED: Glycine max uncharacterized LOC102661438 (LOC102661438), mRNA uncharacterized LOC102661438(LOC102661438) coding protein psRNATarget
XM_014770570.1
ncRNA:22   ACUGCAGACUCCGUCGUUU-CUU   1
  |||||||||||||||||||-|||
targets:290   UGACGUCUGAGGCAGCAAAAGAA   312

3.0 PREDICTED: Glycine max uncharacterized LOC106796922 (LOC106796922), mRNA uncharacterized LOC106796922(LOC106796922) coding protein psRNATarget
XM_014763110.1
ncRNA:22   ACUGCAGACUCCGUCGUUU-CUU   1
  |||||||||||||||||||-|||
targets:813   UGACGUCUGAGGCAGCAAAAGAA   835

3.0 PREDICTED: Glycine max uncharacterized LOC106794980 (LOC106794980), mRNA uncharacterized LOC106794980(LOC106794980) coding protein psRNATarget
XM_014776335.1
ncRNA:22   ACUGCAGACUCCGUCGUUUCUU   1
  |||*||||*||||||||||||=
targets:2108   UGAAGUCUAAGGCAGCAAAGAG   2129

3.0 PREDICTED: Glycine max uncharacterized LOC106798924 (LOC106798924), mRNA uncharacterized LOC106798924(LOC106798924) coding protein psRNATarget
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