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BaseInfo

ncRNA ID novel_gma_miR4844
Species Glycine max
Class miRNA
Genome position Chr5:9557329-9557443 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 24
Mature sequence(if miRNA) 1 - AUUUAUGUUUGUCUCUCUAUAAAU - 24
Stem-loop(if miRNA) --AU    G       C   A   -A      GU       UUAAA      CCAC  AC
    UUAU UUUGUCU UCU UAA  UAUAUG  UUCAAAU     UAUAAA    AC  A
    |||| ||||||| ||| |||  ||||||  |||||||     ||||||    ||
    AAUA AAAUAGA AGA AUU  AUAUAU  AAGUUUA     AUAUUU    UG  U
AUUU    -       -   A   AA      --       UGGUA      ACAC  AG
Stem-loop sequence AUUUAUGUUUGUCUCUCUAUAAAUAUAUGGUUUCAAAUUUAAAUAUAAACCACACACAUGAGUCACAUUUAUAAUGGUAUUUGAAUAUAUAAAUUAAAGAAGAUAAAAUAAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599161.2
ncRNA:24   UAAAUAUCUCUCUGUUUGUAUUUA   1
  |****||||||||=|||||||||*
targets:250   AAACCUAGAGAGAUAAACAUAAAG   273

2.5 PREDICTED: Glycine max uncharacterized LOC100780719 (LOC100780719), transcript variant X1, mRNA uncharacterized LOC100780719(LOC100780719) coding protein psRNATarget
XM_006599163.2
ncRNA:24   UAAAUAUCUCUCUGUUUGUAUUUA   1
  |****||||||||=|||||||||*
targets:333   AAACCUAGAGAGAUAAACAUAAAG   356

2.5 PREDICTED: Glycine max uncharacterized LOC100780719 (LOC100780719), transcript variant X4, mRNA uncharacterized LOC100780719(LOC100780719) coding protein psRNATarget
XM_014768484.1
ncRNA:24   UAAAUAUCUCUCUGUUUGUAUUUA   1
  |****||||||||=|||||||||*
targets:339   AAACCUAGAGAGAUAAACAUAAAG   362

2.5 PREDICTED: Glycine max uncharacterized LOC100780719 (LOC100780719), transcript variant X3, mRNA uncharacterized LOC100780719(LOC100780719) coding protein psRNATarget
XM_006599162.2
ncRNA:24   UAAAUAUCUCUCUGUUUGUAUUUA   1
  |****||||||||=|||||||||*
targets:342   AAACCUAGAGAGAUAAACAUAAAG   365

2.5 PREDICTED: Glycine max uncharacterized LOC100780719 (LOC100780719), transcript variant X2, mRNA uncharacterized LOC100780719(LOC100780719) coding protein psRNATarget
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