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BaseInfo

ncRNA ID novel_gma_miR4830
Species Glycine max
Class miRNA
Genome position Chr11:15537116-15537194 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 24
Mature sequence(if miRNA) 56 - AAUGAUAGAUUUUUUAAGACGGUU - 79
Stem-loop(if miRNA) --               G    C  C     A      UA
  CCGUCUUAGAAAAUU UAUU UU UAAGA GAUUUU  G
  ||||||||||||||| |||| || ||||| ||||||
  GGCAGAAUUUUUUAG AUAG AA AUUCU CUAAAA  C
UU               -    U  A     G      CU
Stem-loop sequence CCGUCUUAGAAAAUUGUAUUCUUCUAAGAAGAUUUUUAGCUCAAAAUCGUCUUAAAAUGAUAGAUUUUUUAAGACGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585632.2
ncRNA:24   UUGGCAGAAUUUUUUAGAUAGUAA   1
  =|==-||||*|=||||||||||||
targets:648   GAUU-UCUUCAGAAAUCUAUCAUU   670

2.5 PREDICTED: Glycine max uncharacterized LOC100781970 (LOC100781970), transcript variant X2, mRNA uncharacterized LOC100781970(LOC100781970) coding protein psRNATarget
XM_006585631.2
ncRNA:24   UUGGCAGAAUUUUUUAGAUAGUAA   1
  =|==-||||*|=||||||||||||
targets:704   GAUU-UCUUCAGAAAUCUAUCAUU   726

2.5 PREDICTED: Glycine max uncharacterized LOC100781970 (LOC100781970), transcript variant X1, mRNA uncharacterized LOC100781970(LOC100781970) coding protein psRNATarget
XM_014767097.1
ncRNA:24   UUGGCAGAAUUUUUUAGAUAGUAA   1
  ***=||=||==|||||||||||||
targets:2292   UUAUGUUUUGGAAAAUCUAUCAUU   2315

3.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100784274), mRNA E3 ubiquitin-protein ligase KEG-like(LOC100784274) coding protein psRNATarget