Search result

BaseInfo

ncRNA ID novel_gma_miR4829
Species Glycine max
Class miRNA
Genome position Chr4:41502279-41502349 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 20
Mature sequence(if miRNA) 1 - UAAGACGGAUCAUGCUUUGU - 20
Stem-loop(if miRNA) --         UCA       UC  UCUUUCGCUU
  UAAGACGGA   UGCUUUG  GA          C
  |||||||||   |||||||  ||          U
  AUUCUGCUU   ACGGAGC  CU          U
CA         UCC       UU  UUCACAACUU
Stem-loop sequence UAAGACGGAUCAUGCUUUGUCGAUCUUUCGCUUCUUUUCAACACUUUCUUCGAGGCACCUUUCGUCUUAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006573972.1
ncRNA:20   UGUUUCGUACUAGGCAGAAU   1
  |||||||=||||||||||||
targets:73   ACAAAGCGUGAUCCGUCUUA   92

1.5 PREDICTED: Glycine max uncharacterized LOC102666232 (LOC102666232), mRNA uncharacterized LOC102666232(LOC102666232) coding protein psRNATarget
XM_006589792.1
ncRNA:20   UGUUUCGUACUAGGCAGAAU   1
  |||||||=||||||||||||
targets:73   ACAAAGCGUGAUCCGUCUUA   92

1.5 PREDICTED: Glycine max uncharacterized LOC102659887 (LOC102659887), mRNA uncharacterized LOC102659887(LOC102659887) coding protein psRNATarget
XM_006577439.2
ncRNA:20   UGUUUCGUACUAGGCAGAAU   1
  |||||||=||||||||||||
targets:172   ACAAAGCGUGAUCCGUCUUA   191

1.5 PREDICTED: Glycine max uncharacterized LOC102669871 (LOC102669871), mRNA uncharacterized LOC102669871(LOC102669871) coding protein psRNATarget
XM_006605123.1
ncRNA:20   UGUUUCGUACUAGGCAGAAU   1
  ||||||==||||||||||||
targets:112   ACAAAGUGUGAUCCGUCUUA   131

2.5 PREDICTED: Glycine max uncharacterized LOC102664444 (LOC102664444), mRNA uncharacterized LOC102664444(LOC102664444) coding protein psRNATarget
XM_006582533.1
ncRNA:20   UGUUUCGUACUAGGCAGAAU   1
  |||||*|=||||||||||||
targets:1441   ACAAAACGUGAUCCGUCUUA   1460

2.5 PREDICTED: Glycine max uncharacterized LOC102661533 (LOC102661533), mRNA uncharacterized LOC102661533(LOC102661533) coding protein psRNATarget