Search result

BaseInfo

ncRNA ID	novel_gma_miR4802
Species	Glycine max
Class	miRNA
Genome position	Chr11:4205494-4205598 [-]
Reference genome	Glycine_max_v2.0
Source	SRR2968974;SRR835759;SRR835767
Length	24
Mature sequence(if miRNA)	82 - AGAAGAUUCUUCCGGAUGAACAAU - 105
Stem-loop(if miRNA)	--    GA          U         --AUUA  C        C          AGAA  UUCUUCCGGA GAACAAUUU      UA CGGAAGAA CUUCUUCC   ||||  |||||||||| |||||||||      || |||||||| |||||||C   UCUU  AAGAAGGUCU UUUGUUAAA      AU GCCUUCUU GAAGAAGG CU    AG          U         CACAAG  U        A
Stem-loop sequence	AGAAGAUUCUUCCGGAUGAACAAUUUAUUAUACCGGAAGAACCUUCUUCCCGGAAGAAGAUUCUUCCGUUAGAACACAAAUUGUUUUUCUGGAAGAAGAUUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775617.1	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   =**|||==||*||||||||||||| targets:1536   GAGGUUUGUCAGGAAGAAUCUUCU   1559 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100797813 (LOC100797813), transcript variant X4, mRNA	uncharacterized LOC100797813(LOC100797813)	coding protein	psRNATarget
XM_014775616.1	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   =**|||==||*||||||||||||| targets:1789   GAGGUUUGUCAGGAAGAAUCUUCU   1812 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100797813 (LOC100797813), transcript variant X3, mRNA	uncharacterized LOC100797813(LOC100797813)	coding protein	psRNATarget
XM_014775615.1	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   =**|||==||*||||||||||||| targets:1912   GAGGUUUGUCAGGAAGAAUCUUCU   1935 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100797813 (LOC100797813), transcript variant X2, mRNA	uncharacterized LOC100797813(LOC100797813)	coding protein	psRNATarget
XM_006579932.2	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   =**|||==||*||||||||||||| targets:2160   GAGGUUUGUCAGGAAGAAUCUUCU   2183 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100797813 (LOC100797813), transcript variant X1, mRNA	uncharacterized LOC100797813(LOC100797813)	coding protein	psRNATarget
XM_006602627.2	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   |**||||*||=||||||||||||* targets:2132   AAGGUUCUUCUGGAAGAAUCUUCC   2155 Target Full Sequence	3.0	PREDICTED: Glycine max probable WRKY transcription factor 33 (LOC100792833), transcript variant X2, mRNA	probable WRKY transcription factor 33(LOC100792833)	coding protein	psRNATarget
XM_014771244.1	ncRNA:24   UAACAAGUAGGCCUUCUUAGAAGA   1   |**||||*||=||||||||||||* targets:2134   AAGGUUCUUCUGGAAGAAUCUUCC   2157 Target Full Sequence	3.0	PREDICTED: Glycine max probable WRKY transcription factor 33 (LOC100792833), transcript variant X1, mRNA	probable WRKY transcription factor 33(LOC100792833)	coding protein	psRNATarget