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BaseInfo

ncRNA ID novel_gma_miR4800
Species Glycine max
Class miRNA
Genome position Chr20:39360471-39360542 [-]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 21
Mature sequence(if miRNA) 52 - GGGCUUCUCUUUAUUGGCAGG - 72
Stem-loop(if miRNA) --    UU     UA         AAU    A   CCA
  GGGC  CUCUU  UUGGCAGGA   UAUC UGA   C
  ||||  |||||  |||||||||   |||| |||
  CCCG  GAGAG  AACCGUUCU   AUAG ACU   U
GU    UU     GA         ---    -   ACU
Stem-loop sequence GGGCUUCUCUUUAUUGGCAGGAAAUUAUCAUGACCACUUCAUCAGAUAUCUUGCCAAAGGAGAGUUGCCCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003537025.3
ncRNA:21   GGACGGUUAUUUCUCUUCGGG   1
  ***|||||||*||||||||||
targets:470   AACGCCAAUACAGAGAAGCCC   490

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g11460 (LOC100789146), mRNA putative pentatricopeptide repeat-containing protein At3g11460(LOC100789146) coding protein psRNATarget