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BaseInfo

ncRNA ID	novel_gma_miR4790
Species	Glycine max
Class	miRNA
Genome position	Chr19:30909192-30909341 [-]
Reference genome	Glycine_max_v2.0
Source	SRR2968974
Length	21
Mature sequence(if miRNA)	1 - UAGGGUUUAGGGUUUACGGUU - 21
Stem-loop(if miRNA)	--       G      A      G       G   U G      AUU    GU A   GU     GU    GU U   CCGUAGG UUUAGG UUUAGG UUUAGGG UUA G UUUAGA   UAGA  U AGG  UUAGG  CUAA  C U   ||||||| |||||| |||||| ||||||| ||| | ||||||   ||||  | |||  |||||  ||||  |   GGCAUUU GGAUUU GGAUUU GGAUUCC AAU U GGAUUU   AUUU  G UUC  AAUCU  GAUU  G A UU       G      G      G       G   C G      GUU    UG A   UG     GU    UG U
Stem-loop sequence	CCGUAGGGUUUAGGAUUUAGGGUUUAGGGGUUAUGGUUUAGAAUUUAGAGUUAAGGGUUUAGGGUCUAAGUCUUAUGGUUUAGUGUCUAAGUCUUAGGUUUUAUUGUUUAGGGUCUAAGCCUUAGGGUUUAGGGUUUAGGGUUUACGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006602058.2	ncRNA:21   UUGGCAUUUGGGAUUUGGGAU   1   **|=||||||||||||||||| targets:15   CCCUGUAAACCCUAAACCCUA   35 Target Full Sequence	1.0	PREDICTED: Glycine max probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase (LOC100807160), mRNA	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase(LOC100807160)	coding protein	psRNATarget
XM_003530761.3	ncRNA:21   UUGGC-AUUUGGGAUUUGGGAU   1   **|||-|||||||||||||||| targets:27   UCCCGGUAAACCCUAAACCCUA   48 Target Full Sequence	2.0	PREDICTED: Glycine max probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase (LOC100789776), mRNA	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase(LOC100789776)	coding protein	psRNATarget
XM_006577175.2	ncRNA:21   UUGGCAUUUGGGAUUUGGGAU   1   **||*|||||||||||||||* targets:304   UUCCCUAAACCCUAAACCCUC   324 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102669955 (LOC102669955), mRNA	uncharacterized LOC102669955(LOC102669955)	coding protein	psRNATarget
XM_003553675.3	ncRNA:21   UUGGCAUUUGGGAUUUGGGAU   1   **||*|||||||||||||||* targets:391   UUCCCUAAACCCUAAACCCUC   411 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100807006 (LOC100807006), mRNA	uncharacterized LOC100807006(LOC100807006)	coding protein	psRNATarget
XM_006605751.2	ncRNA:21   UUGGCA-UUUGGGAUUUGGGAU   1   |||||*-||||||||||||||| targets:411   AACCGACAAACCCUAAACCCUA   432 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20740-like (LOC100788816), mRNA	pentatricopeptide repeat-containing protein At4g20740-like(LOC100788816)	coding protein	psRNATarget
XM_014776694.1	ncRNA:21   UUGGCA-UUUGGGAUUUGGGAU   1   |||||*-||||||||||||||| targets:387   AACCGACAAACCCUAAACCCUA   408 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20740-like (LOC102662754), mRNA	pentatricopeptide repeat-containing protein At4g20740-like(LOC102662754)	coding protein	psRNATarget
XM_014765941.1	ncRNA:21   UUGGCAUUUGGGAUUUGGGAU   1   ***=||=|||||||||||||| targets:22   UUGUGUGAACCCUAAACCCUA   42 Target Full Sequence	3.0	PREDICTED: Glycine max polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like (LOC100785120), transcript variant X2, mRNA	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like(LOC100785120)	coding protein	psRNATarget
XM_003541829.3	ncRNA:21   UUGGCAUUUGGGAUUUGGGAU   1   ***=||=|||||||||||||| targets:21   UUGUGUGAACCCUAAACCCUA   41 Target Full Sequence	3.0	PREDICTED: Glycine max polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like (LOC100785120), transcript variant X1, mRNA	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like(LOC100785120)	coding protein	psRNATarget