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BaseInfo

ncRNA ID novel_gma_miR4776
Species Glycine max
Class miRNA
Genome position Chr18:2372230-2372326 [+]
Reference genome Glycine_max_v2.0
Source SRR2968974
Length 21
Mature sequence(if miRNA) 77 - UGAUUUUAGCUUAUGGGAGAA - 97
Stem-loop(if miRNA) --                    C   UGU   U        C   -  UA
  CUCUCAUAAGCUAAAAUCAA UUA   GCA CUUAACUU UAU GA  G
  |||||||||||||||||||| |||   ||| |||||||| ||| ||  U
  GAGGGUAUUCGAUUUUAGUU AAU   CGU GAAUUGAA AUA CU  G
AA                    A   --U   -        A   U  UC
Stem-loop sequence CUCUCAUAAGCUAAAAUCAACUUAUGUGCAUCUUAACUUCUAUGAUAGUGCUUCUAUAAAAGUUAAGUGCUUAAAUUGAUUUUAGCUUAUGGGAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006574366.2
ncRNA:21   AAGAGGGUAUUCGAUUUUAGU   1
  ||||=||||||||||||||||
targets:1321   UUCUUCCAUAAGCUAAAAUCA   1341

1.0 PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA uncharacterized LOC100798622(LOC100798622) coding protein psRNATarget
XM_006583838.2
ncRNA:21   AAGAGGGUAUUCGAUUUUAGU   1
  |||||||*||||=||||||||
targets:3709   UUCUCCCUUAAGUUAAAAUCA   3729

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) coding protein psRNATarget
XM_006583837.2
ncRNA:21   AAGAGGGUAUUCGAUUUUAGU   1
  |||||||*||||=||||||||
targets:3852   UUCUCCCUUAAGUUAAAAUCA   3872

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884) coding protein psRNATarget
AK286967.1
ncRNA:21   AAGAGGGUAUUCGAUUUUAGU   1
  |||||||*|||*|||||||||
targets:485   UUCUCCCUUAAACUAAAAUCA   505

2.5 Glycine max cDNA, clone: GMFL01-41-C10 NA coding protein psRNATarget