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BaseInfo

ncRNA ID novel_gma_miR4690
Species Glycine max
Class miRNA
Genome position Chr10:48068405-48068489 [-]
Reference genome Glycine_max_v2.0
Source SRR2045371;SRR1292929;SRR1294474
Length 24
Mature sequence(if miRNA) 62 - AGUGAGACAAGGGUAGAAAGUGCU - 85
Stem-loop(if miRNA) --  U     AAG  U        -   A CU    A     AC
  AG GAGAC   GG AGAAAGUG CUG C  GUCA GCAUG  C
  || |||||   || |||||||| ||| |  |||| |||||
  UC CUUUG   CC UCUUUCAC GAU G  UAGU CGUGC  A
UA  C     -CA  U        A   C UU    -     AG
Stem-loop sequence AGUGAGACAAGGGUAGAAAGUGCUGACCUGUCAAGCAUGACCAGACGUGCUGAUUUGCUAGACACUUUCUUCCACGUUUCCCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534283.3
ncRNA:24   UCGUGAAAGAUGGGAACAGAGUGA   1
  ||||-|*||||||||||||*||||
targets:1264   AGCA-UAUCUACCCUUGUCACACU   1286

2.5 PREDICTED: Glycine max protein NUCLEAR FUSION DEFECTIVE 4-like (LOC100775393), mRNA protein NUCLEAR FUSION DEFECTIVE 4-like(LOC100775393) coding protein psRNATarget
XM_003516451.3
ncRNA:24   UCGUGAAAGAUGGGAACAGAGUGA   1
  ||=|-|*||||||||||||*||||
targets:1240   AGUA-UAUCUACCCUUGUCACACU   1262

2.5 PREDICTED: Glycine max protein NUCLEAR FUSION DEFECTIVE 4-like (LOC100814771), mRNA protein NUCLEAR FUSION DEFECTIVE 4-like(LOC100814771) coding protein psRNATarget