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BaseInfo

ncRNA ID novel_gma_miR4681
Species Glycine max
Class miRNA
Genome position Chr7:12474811-12474972 [+]
Reference genome Glycine_max_v2.0
Source SRR2045371
Length 24
Mature sequence(if miRNA) 1 - UUUUAGUCCCUGUAGUUUUGAAAG - 24
Stem-loop(if miRNA) --        CC        U       G                 A   -   AAUUCUUAC                  U
  UUUUAGUC  UGUAGUUU GAAAGUG UCUUUUUAGUCCUUAUA UUU CAU         UUUUUAGUUCCUAUAGUU U
  ||||||||  |||||||| ||||||| ||||||||||||||||| ||| |||         ||||||||||||||||||
  AAAAUUAG  ACAUCAAA UUUUCAC AGAAAAAUCAGGGAUAU AAA GUA         GAGAAUCAGGGAUAUUAA C
AG        AA        -       A                 G   U   AAAUUAAAA                  A
Stem-loop sequence UUUUAGUCCCUGUAGUUUUGAAAGUGGUCUUUUUAGUCCUUAUAAUUUCAUAAUUCUUACUUUUUAGUUCCUAUAGUUUUCAAAUUAUAGGGACUAAGAGAAAAUUAAAAUGUAAAGUAUAGGGACUAAAAAGAACACUUUUAAACUACAAAGAUUAAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544171.3
ncRNA:24   GAAAGUUUUGAUGUCCCUGAUUUU   1
  ||||=||||=|||||*||||||||
targets:1024   CUUUUAAAAUUACAGAGACUAAAA   1047

2.5 PREDICTED: Glycine max expansin-A6 (LOC100809018), mRNA expansin-A6(LOC100809018) coding protein psRNATarget