Search result

BaseInfo

ncRNA ID	novel_gma_miR4670
Species	Glycine max
Class	miRNA
Genome position	Chr18:38158803-38158988 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2045371;SRR2045372;SRR1295520;SRR1294474;SRR1451615;SRR1294475
Length	24
Mature sequence(if miRNA)	163 - AAGAAACAGUAAAAUAUGAAGGAC - 186
Stem-loop(if miRNA)	--      G                                                      GUAAAA         AUA           G   CCUUCA AUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUAGUAUAAGGCUAUGGC      ACAUGGUCU   UUUACUUCUAA A   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||   ||||||||||| U   GGAAGU UAAAAUGACAAAGAAAAAUGAUUAUACAUUUAUAUUUAUCAUAUUCCGAUACCG      UGUACCAGA   AAAUGGGGAUU U CA      A                                                      AAUACC         -AA           G
Stem-loop sequence	CCUUCAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUAGUAUAAGGCUAUGGCGUAAAAACAUGGUCUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAAGACCAUGUCCAUAAGCCAUAGCCUUAUACUAUUUAUAUUUACAUAUUAGUAAAAAGAAACAGUAAAAUAUGAAGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593805.2	ncRNA:24   CAGGAAGUAUAAAAUGACAAAGAA   1   ||||||||*||||||||||||||| targets:1503   GUCCUUCAGAUUUUACUGUUUCUU   1526 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006593804.2	ncRNA:24   CAGGAAGUAUAAAAUGACAAAGAA   1   ||||||||*||||||||||||||| targets:1527   GUCCUUCAGAUUUUACUGUUUCUU   1550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_003536732.3	ncRNA:24   CAGGAAGUAUAAAAUGACAAAGAA   1   **|||||*|||||||||*|||||| targets:383   UCCCUUCUUAUUUUACUCUUUCUU   406 Target Full Sequence	2.5	PREDICTED: Glycine max 3-ketoacyl-CoA synthase 21-like (LOC100777403), mRNA	3-ketoacyl-CoA synthase 21-like(LOC100777403)	coding protein	psRNATarget
AK244672.1	ncRNA:24   CAGG------AAGUAUAAAAUGACAAAGAA   1   ||||------|||*|||||||||*|||||| targets:1142   GUCCCGACUUUUCUUAUUUUACUUUUUCUU   1171 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-10-D11	NA	coding protein	psRNATarget
XM_014775464.1	ncRNA:24   CAGG------AAGUAUAAAAUGACAAAGAA   1   ||||------|||*|||||||||*|||||| targets:1277   GUCCCGACUUUUCUUAUUUUACUUUUUCUU   1306 Target Full Sequence	2.5	PREDICTED: Glycine max BTB/POZ and TAZ domain-containing protein 1-like (LOC100785655), mRNA	BTB/POZ and TAZ domain-containing protein 1-like(LOC100785655)	coding protein	psRNATarget