Search result

BaseInfo

ncRNA ID novel_gma_miR4667
Species Glycine max
Class miRNA
Genome position Chr17:17318010-17318173 [+]
Reference genome Glycine_max_v2.0
Source SRR2045371
Length 24
Mature sequence(if miRNA) 1 - UUUUAGUCCCUGUAGUUUUGAAAG - 24
Stem-loop(if miRNA) --        C         U       G                     ----CA        ACUUU                UU
  UUUUAGUC CUGUAGUUU GAAAGUG UCUUUUUAGUUCCUAUAGUUU      UGAUUCUU     UUUUAGUCCCUAUAGU  C
  |||||||| ||||||||| ||||||| |||||||||||||||||||||      ||||||||     ||||||||||||||||
  AAAAUCAG GACAUCAAA UUUUCAC AGAAAAAUCAGGGAUAUCAAA      AUUAAGAA     AAAAUCAGGGAUAUUA  C
AG        A         -       A                     UAUAAA        -----                UA
Stem-loop sequence UUUUAGUCCCUGUAGUUUUGAAAGUGGUCUUUUUAGUUCCUAUAGUUUCAUGAUUCUUACUUUUUUUAGUCCCUAUAGUUUCCAUAUUAUAGGGACUAAAAAAGAAUUAAAAUAUAAACUAUAGGGACUAAAAAGAACACUUUUAAACUACAGAGACUAAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544171.3
ncRNA:24   GAAAGUUUUGAUGUCCCUGAUUUU   1
  ||||=||||=|||||*||||||||
targets:1024   CUUUUAAAAUUACAGAGACUAAAA   1047

2.5 PREDICTED: Glycine max expansin-A6 (LOC100809018), mRNA expansin-A6(LOC100809018) coding protein psRNATarget