ncRNA ID | novel_gma_miR4667 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:17318010-17318173 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR2045371 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUUUAGUCCCUGUAGUUUUGAAAG - 24 |
Stem-loop(if miRNA) |
--        C         U       G                     ----CA        ACUUU                UU   UUUUAGUC CUGUAGUUU GAAAGUG UCUUUUUAGUUCCUAUAGUUU      UGAUUCUU     UUUUAGUCCCUAUAGU  C   |||||||| ||||||||| ||||||| |||||||||||||||||||||      ||||||||     ||||||||||||||||   AAAAUCAG GACAUCAAA UUUUCAC AGAAAAAUCAGGGAUAUCAAA      AUUAAGAA     AAAAUCAGGGAUAUUA  C AG        A         -       A                     UAUAAA        -----                UA |
Stem-loop sequence | UUUUAGUCCCUGUAGUUUUGAAAGUGGUCUUUUUAGUUCCUAUAGUUUCAUGAUUCUUACUUUUUUUAGUCCCUAUAGUUUCCAUAUUAUAGGGACUAAAAAAGAAUUAAAAUAUAAACUAUAGGGACUAAAAAGAACACUUUUAAACUACAGAGACUAAAAGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003544171.3 |
|
2.5 | PREDICTED: Glycine max expansin-A6 (LOC100809018), mRNA | expansin-A6(LOC100809018) | coding protein | psRNATarget |