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BaseInfo

ncRNA ID novel_gma_miR4638
Species Glycine max
Class miRNA
Genome position Chr4:47103713-47103928 [+]
Reference genome Glycine_max_v2.0
Source SRR1294487
Length 22
Mature sequence(if miRNA) 1 - UAAACUCAAAUCACCCUAUGGC - 22
Stem-loop(if miRNA) --      C        C        A      C              C            AA A         C   C      -------C  UAGUAUUCUGACAUGG
  UAAACU AAAUCACC UAUGGCCG UGAAGU AAAGCCAAAGGCAA GUAACUUACUCC  C ACGACUAUG CAC GCCAUC        GC                G
  |||||| |||||||| |||||||| |||||| |||||||||||||| ||||||||||||  | ||||||||| ||| ||||||        ||                A
  AUUUGA UUUGGUGG AUACCGGC GCUUCA UUUUGGUUUCCGUU CGUUGAAUGAGG  G UGUUGAUGC GUG UGGUAG        CG                U
GG      A        U        C      U              A            AA C         A   C      AACGUAAA  GUACCGAGACCGGGAA
Stem-loop sequence UAAACUCAAAUCACCCUAUGGCCGAUGAAGUCAAAGCCAAAGGCAACGUAACUUACUCCAACAACGACUAUGCCACCGCCAUCCGCUAGUAUUCUGACAUGGGAUAAGGGCCAGAGCCAUGGCAAAUGCAAGAUGGUCGUGACGUAGUUGUCGAAGGAGUAAGUUGCAUUGCCUUUGGUUUUUACUUCGCCGGCCAUAUGGUGGUUUAAGUUUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003521876.3
ncRNA:22   CGGUAUCCCACUAAACUCAAAU   1
  **||||||*|*|||||||||||
targets:1444   AACAUAGGUUAAUUUGAGUUUA   1465

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor ERF086-like (LOC100810022), mRNA ethylene-responsive transcription factor ERF086-like(LOC100810022) coding protein psRNATarget