Search result

BaseInfo

ncRNA ID novel_gma_miR4632
Species Glycine max
Class miRNA
Genome position Chr1:35892053-35892230 [-]
Reference genome Glycine_max_v2.0
Source SRR2045238
Length 23
Mature sequence(if miRNA) 1 - UUUGGGAGAGAUGAGAUUGGAUC - 23
Stem-loop(if miRNA) --            A        -      A   AUUCUCAUU         AUA         CAAUGCA    C   C   ACCUCC
  UCUAAUCUCAUC CUCUCAAA GUUAGU UAA         AGGGCAUUU   UUCCAUACU       UGGC AAA CAC      U
  |||||||||||| |||||||| |||||| |||         |||||||||   |||||||||       |||| ||| |||      A
  AGGUUAGAGUAG GAGGGUUU CAAUCA AUU         UCUUGUAAA   AAGGUAUGA       ACCG UUU GUG      A
CU            A        U      C   AAAAAAUGU         GAC         AUCAUAG    A   A   AGAACA
Stem-loop sequence UCUAAUCUCAUCACUCUCAAAGUUAGUAUAAAUUCUCAUUAGGGCAUUUAUAUUCCAUACUCAAUGCAUGGCCAAACCACACCUCCUAAACAAGAGUGAUUUAGCCAGAUACUAAGUAUGGAACAGAAAUGUUCUUGUAAAAAAUUACACUAACUUUUGGGAGAGAUGAGAUUGGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602554.2
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1763   GAUAAAAUCUCAUCUCUCUCAAA   1785

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100792294), transcript variant X3, mRNA rop guanine nucleotide exchange factor 7-like(LOC100792294) coding protein psRNATarget
XM_006602553.2
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1780   GAUAAAAUCUCAUCUCUCUCAAA   1802

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100792294), transcript variant X2, mRNA rop guanine nucleotide exchange factor 7-like(LOC100792294) coding protein psRNATarget
XM_003529061.3
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1844   GAUAAAAUCUCAUCUCUCUCAAA   1866

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100800673), transcript variant X3, mRNA rop guanine nucleotide exchange factor 7-like(LOC100800673) coding protein psRNATarget
XM_014771219.1
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1852   GAUAAAAUCUCAUCUCUCUCAAA   1874

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100792294), transcript variant X1, mRNA rop guanine nucleotide exchange factor 7-like(LOC100792294) coding protein psRNATarget
XM_006583543.2
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1918   GAUAAAAUCUCAUCUCUCUCAAA   1940

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100800673), transcript variant X2, mRNA rop guanine nucleotide exchange factor 7-like(LOC100800673) coding protein psRNATarget
XM_014777991.1
ncRNA:23   CUAGGUUAGAGUAGAGAGGGUUU   1
  |||**|||||||||||||=||||
targets:1933   GAUAAAAUCUCAUCUCUCUCAAA   1955

2.5 PREDICTED: Glycine max rop guanine nucleotide exchange factor 7-like (LOC100800673), transcript variant X1, mRNA rop guanine nucleotide exchange factor 7-like(LOC100800673) coding protein psRNATarget