Search result

BaseInfo

ncRNA ID	novel_gma_miR4631
Species	Glycine max
Class	miRNA
Genome position	Chr4:13369446-13369614 [-]
Reference genome	Glycine_max_v2.0
Source	SRR2045238
Length	24
Mature sequence(if miRNA)	146 - AACAAAGGAAAAAGAUAUCAAACC - 169
Stem-loop(if miRNA)	--AAC                  A        U   CUU        UU  A          C   C     AUAG  C   UUCC      AAAGGAAAAAGAUAUCAA CCUUUGAU UAG   AAUUGGUC  CG AUUAGAAUUC ACU UGAAU    CU GUC    U      |||||||||||||||||| |||||||| |||   ||||||||  || |||||||||| ||| |||||    || |||    U      UUUCCUUUUUCUGUGGUU GGAAACUG AUC   UUAACCAG  GU UAAUUUUAAG UGA ACUUA    GA UAG    A UUUUA                  C        U   CAU        UC  A          U   A     ----  C   UGUU
Stem-loop sequence	AACAAAGGAAAAAGAUAUCAAACCUUUGAUUUAGCUUAAUUGGUCUUCGAAUUAGAAUUCCACUCUGAAUAUAGCUCGUCUUCCUUAUUGUGAUCAGAUUCAAAGUUGAAUUUUAAUAUGCUGACCAAUUUACCUAUGUCAAAGGCUUGGUGUCUUUUUCCUUUAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006606488.2	ncRNA:24   CCAAACUAUAGAAAAAGGAAACAA   1   ****||||*|=||||||||||||| targets:2086   CUCGUGAUUUUUUUUUCCUUUGUU   2109 Target Full Sequence	2.0	PREDICTED: Glycine max importin subunit alpha-2-like (LOC100797267), transcript variant X2, mRNA	importin subunit alpha-2-like(LOC100797267)	coding protein	psRNATarget
XM_003556487.3	ncRNA:24   CCAAACUAUAGAAAAAGGAAACAA   1   ****||||*|=||||||||||||| targets:2068   CUCGUGAUUUUUUUUUCCUUUGUU   2091 Target Full Sequence	2.0	PREDICTED: Glycine max importin subunit alpha-2-like (LOC100797267), transcript variant X1, mRNA	importin subunit alpha-2-like(LOC100797267)	coding protein	psRNATarget
XM_006587279.2	ncRNA:24   CC---AAACUAUAGAAAAAGGAAACAA   1   ||---||*||*|||||||||||||||* targets:1844   GGAACUUGGAAAUCUUUUUCCUUUGUA   1870 Target Full Sequence	2.0	PREDICTED: Glycine max F-box/LRR-repeat protein At3g26922-like (LOC100806405), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g26922-like(LOC100806405)	coding protein	psRNATarget
XM_003533151.3	ncRNA:24   CC---AAACUAUAGAAAAAGGAAACAA   1   ||---||*||*|||||||||||||||* targets:1836   GGAACUUGGAAAUCUUUUUCCUUUGUA   1862 Target Full Sequence	2.0	PREDICTED: Glycine max F-box/LRR-repeat protein At3g26922-like (LOC100806405), transcript variant X2, mRNA	F-box/LRR-repeat protein At3g26922-like(LOC100806405)	coding protein	psRNATarget
XM_003529209.3	ncRNA:24   CCAAACUAUAGAAAAAGGAAACAA   1   **|||*||*|=||||||||||||| targets:821   UUUUUUAUUUUUUUUUCCUUUGUU   844 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100790978 (LOC100790978), transcript variant X2, mRNA	uncharacterized LOC100790978(LOC100790978)	coding protein	psRNATarget
XM_006583706.2	ncRNA:24   CCAAACUAUAGAAAAAGGAAACAA   1   **|||*||*|=||||||||||||| targets:819   UUUUUUAUUUUUUUUUCCUUUGUU   842 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100790978 (LOC100790978), transcript variant X1, mRNA	uncharacterized LOC100790978(LOC100790978)	coding protein	psRNATarget