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BaseInfo

ncRNA ID	novel_gma_miR4628
Species	Glycine max
Class	miRNA
Genome position	Chr3:2768-2909 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294487
Length	24
Mature sequence(if miRNA)	119 - UAGGGUUUAGGGUUUAGGGUUUGG - 142
Stem-loop(if miRNA)	--    G      G      G     UU    GGUU    G UUAUGGUUUAUGCUUUUAGGAUUUAGGUUUU   UAGG UUUAGG UUUAGG UUUGG  UUAG    UAAG U                               A   |||| |||||| |||||| |||||  ||||    |||| |                               G   AUUU GGAUUU GGAUUC GGAUU  GAUU    UGGG A                               G GG    G      G      G     GG    ----    - GUUGGGAUUCGGGGUUCGGGUUGGGUAUUUG
Stem-loop sequence	UAGGGUUUAGGGUUUAGGGUUUGGUUUUAGGGUUUAAGGUUUAUGGUUUAUGCUUUUAGGAUUUAGGUUUUAGGGUUUAUGGGUUGGGCUUGGGGCUUAGGGUUGAGGGUUUAGGGUUAGGGCUUAGGGUUUAGGGUUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003553675.3	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   ==***||||||||||||||||||* targets:388   UUCUUCCCUAAACCCUAAACCCUC   411 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100807006 (LOC100807006), mRNA	uncharacterized LOC100807006(LOC100807006)	coding protein	psRNATarget
XM_006577175.2	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   ==***||||||||||||||||||* targets:301   UUCUUCCCUAAACCCUAAACCCUC   324 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC102669955 (LOC102669955), mRNA	uncharacterized LOC102669955(LOC102669955)	coding protein	psRNATarget
XM_003543160.3	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   *=||=||=||||||||||||||*| targets:23   GUAAGCCUUAAACCCUAAACCCAA   46 Target Full Sequence	2.5	PREDICTED: Glycine max cytochrome c oxidase assembly factor 5 (LOC100500616), mRNA	cytochrome c oxidase assembly factor 5(LOC100500616)	coding protein	psRNATarget
XM_006597868.2	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   ||||*=||*||||||||||||||* targets:197   CCAAUUCCCAAACCCUAAACCCUC   220 Target Full Sequence	3.0	PREDICTED: Glycine max p21-activated protein kinase-interacting protein 1-like (LOC100777673), transcript variant X2, mRNA	p21-activated protein kinase-interacting protein 1-like(LOC100777673)	coding protein	psRNATarget
XM_006597869.2	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   ||||*=||*||||||||||||||* targets:198   CCAAUUCCCAAACCCUAAACCCUC   221 Target Full Sequence	3.0	PREDICTED: Glycine max p21-activated protein kinase-interacting protein 1-like (LOC100777673), transcript variant X3, mRNA	p21-activated protein kinase-interacting protein 1-like(LOC100777673)	coding protein	psRNATarget
XM_006597867.2	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   ||||*=||*||||||||||||||* targets:199   CCAAUUCCCAAACCCUAAACCCUC   222 Target Full Sequence	3.0	PREDICTED: Glycine max p21-activated protein kinase-interacting protein 1-like (LOC100777673), transcript variant X1, mRNA	p21-activated protein kinase-interacting protein 1-like(LOC100777673)	coding protein	psRNATarget
XM_003543146.3	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   |==||*||*||||||||||||||* targets:313   CUGAAACCGAAACCCUAAACCCUU   336 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100794833 (LOC100794833), transcript variant X1, mRNA	uncharacterized LOC100794833(LOC100794833)	coding protein	psRNATarget
XM_006594657.2	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   |==||*||*||||||||||||||* targets:318   CUGAAACCGAAACCCUAAACCCUU   341 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100794833 (LOC100794833), transcript variant X2, mRNA	uncharacterized LOC100794833(LOC100794833)	coding protein	psRNATarget
XM_014765876.1	ncRNA:24   GGUUUGGGAUUUGGGAUUUGGGAU   1   |==||*||*||||||||||||||* targets:317   CUGAAACCGAAACCCUAAACCCUU   340 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100794833 (LOC100794833), transcript variant X3, mRNA	uncharacterized LOC100794833(LOC100794833)	coding protein	psRNATarget