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BaseInfo

ncRNA ID novel_gma_miR4571
Species Glycine max
Class miRNA
Genome position Chr4:12392626-12392688 [-]
Reference genome Glycine_max_v2.0
Source SRR2045236
Length 24
Mature sequence(if miRNA) 40 - AAUCCUCAAGUCUGUCAUGUAUUG - 63
Stem-loop(if miRNA) --AA  -         G    G    --    A
    UC CUCAAGUCU UCAU UAUU  GAUC A
    || ||||||||| |||| ||||  |||| A
    AG GAGUUCAGA AGUA AUAG  UUAG U
UCGG  U         -    G    UG    G
Stem-loop sequence AAUCCUCAAGUCUGUCAUGUAUUGAUCAAAUGGAUUGUGAUAGAUGAAGACUUGAGUGAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK286322.1
ncRNA:24   GUUAUGUACUGUCUGAACUCCUAA   1
  |*=|=|||||||||*|||||||||
targets:205   CUGUGCAUGACAGAGUUGAGGAUU   228

1.5 Glycine max cDNA, clone: GMFL01-26-C05 NA coding protein psRNATarget
XM_003519422.3
ncRNA:24   GUUAUGUACUGUCUGAACUCCUAA   1
  |*=|=|||||||||*|||||||||
targets:356   CUGUGCAUGACAGAGUUGAGGAUU   379

1.5 PREDICTED: Glycine max abscisic-aldehyde oxidase (LOC100781659), mRNA abscisic-aldehyde oxidase(LOC100781659) coding protein psRNATarget