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BaseInfo

ncRNA ID	novel_gma_miR4564
Species	Glycine max
Class	miRNA
Genome position	Chr2:1133680-1133823 [-]
Reference genome	Glycine_max_v2.0
Source	SRR2045236
Length	19
Mature sequence(if miRNA)	1 - GAGGAGGGGGAAGAGAAAC - 19
Stem-loop(if miRNA)	--CC G             GCUUUUUUCUAAAAAAAUU     UUUCUCUAAAGACCGUGUUAUCAUUAUCGUUCUAAG     C CUUCCCUCUCCUC                   AAAAU                                    U     | |||||||||||||                   |||||                                    U     G GAAGGGGGAGGAG                   AUAAC                                    A CAAA A             ---------------AACA     CUGUGUUAUUUUUGUGAGAUCCUUCUUGUCUUUUGG
Stem-loop sequence	CCCGCUUCCCUCUCCUCGCUUUUUUCUAAAAAAAUUAAAAUUUUCUCUAAAGACCGUGUUAUCAUUAUCGUUCUAAGUUAGGUUUUCUGUUCUUCCUAGAGUGUUUUUAUUGUGUCCAAUAACAAGAGGAGGGGGAAGAGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006575105.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||=|||||*|||||||| targets:456   GUUUUUCUUCGCCCUCCUC   474 Target Full Sequence	2.5	PREDICTED: Glycine max probable apyrase 6 (LOC100806446), transcript variant X1, mRNA	probable apyrase 6(LOC100806446)	coding protein	psRNATarget
XM_014766411.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||=|||||*|||||||| targets:458   GUUUUUCUUCGCCCUCCUC   476 Target Full Sequence	2.5	PREDICTED: Glycine max probable apyrase 6 (LOC100806446), transcript variant X2, mRNA	probable apyrase 6(LOC100806446)	coding protein	psRNATarget
BT098721.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   |*|||||||||=||||||| targets:831   GCUUCUCUUCCUCCUCCUC   849 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12J24 unknown mRNA	NA	coding protein	psRNATarget
XM_014767539.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   |||*|||||||=||||||| targets:34   GUUCCUCUUCCUCCUCCUC   52 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796075 (LOC106796075), mRNA	uncharacterized LOC106796075(LOC106796075)	coding protein	psRNATarget
XM_006578199.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:367   GUUUCUAUUCCCCCUCCUA   385 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X1, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_006578200.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:367   GUUUCUAUUCCCCCUCCUA   385 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X2, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_006578201.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:368   GUUUCUAUUCCCCCUCCUA   386 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X3, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_014774559.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:367   GUUUCUAUUCCCCCUCCUA   385 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X4, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_006578202.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:367   GUUUCUAUUCCCCCUCCUA   385 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X5, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_006578203.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:366   GUUUCUAUUCCCCCUCCUA   384 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X6, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_014774560.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:367   GUUUCUAUUCCCCCUCCUA   385 Target Full Sequence	2.5	PREDICTED: Glycine max rho GTPase-activating protein REN1-like (LOC100796201), transcript variant X7, mRNA	rho GTPase-activating protein REN1-like(LOC100796201)	coding protein	psRNATarget
XM_006586016.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:1514   GUUUCUGUUCCCCCUCCUG   1532 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein DDB_G0274915-like (LOC100794683), transcript variant X1, mRNA	nuclear pore complex protein DDB_G0274915-like(LOC100794683)	coding protein	psRNATarget
XM_003530696.3	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   ||||||*|||||||||||* targets:1499   GUUUCUGUUCCCCCUCCUG   1517 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein DDB_G0274915-like (LOC100794683), transcript variant X2, mRNA	nuclear pore complex protein DDB_G0274915-like(LOC100794683)	coding protein	psRNATarget
BT089417.1	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   *|||=|||||||||||||= targets:683   UUUUUUCUUCCCCCUCCUU   701 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-1N2 unknown mRNA	NA	coding protein	psRNATarget
NM_001248329.2	ncRNA:19   CAAAGAGAAGGGGGAGGAG   1   *|||=|||||||||||||= targets:681   UUUUUUCUUCCCCCUCCUU   699 Target Full Sequence	3.0	Glycine max uncharacterized LOC100305684 (LOC100305684), mRNA	uncharacterized LOC100305684(LOC100305684)	coding protein	psRNATarget