Search result

BaseInfo

ncRNA ID	novel_gma_miR4548
Species	Glycine max
Class	miRNA
Genome position	Chr20:5966966-5967064 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1294487
Length	25
Mature sequence(if miRNA)	75 - GACCGAUGUAGAAUGCUGAGCAUUU - 99
Stem-loop(if miRNA)	--           G        ---A  -           C       AAU   AUGCUCAGCAU CUACAUUG    UG AGUUGUGACCG UAUAGAA   G   ||||||||||| ||||||||    || ||||||||||| |||||||   C   UACGAGUCGUA GAUGUAGC    AC UCAACACUGGC GUAUCUU   A UU           A        CAGG  A           A       ACA
Stem-loop sequence	AUGCUCAGCAUGCUACAUUGAUGAGUUGUGACCGCUAUAGAAAAUGCAACAUUCUAUGACGGUCACAACUACAGGACCGAUGUAGAAUGCUGAGCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006598094.2	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =|||||*=||||||||||||||||| targets:927   GAAUGCAUAGCAUUCUACAUCGGUC   951 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =|||||*=||||||||||||||||| targets:1040   GAAUGCAUAGCAUUCUACAUCGGUC   1064 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =|||||*=||||||||||||||||| targets:1200   GAAUGCAUAGCAUUCUACAUCGGUC   1224 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =|||||*=||||||||||||||||| targets:1477   GAAUGCAUAGCAUUCUACAUCGGUC   1501 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =|||||*=||||||||||||||||| targets:1640   GAAUGCAUAGCAUUCUACAUCGGUC   1664 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014767461.1	ncRNA:25   UUUACGAGUCGUAAGAUGUAGCCAG   1   =||||*|||*|||||*||||||||| targets:584   GAAUGAUCAUCAUUCAACAUCGGUC   608 Target Full Sequence	2.5	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_003539359.3	ncRNA:25   UUUACGAGU-CGUAAGAUGUAGCCAG   1   |||-|-|||-|||||||||||||||= targets:2798   AAA-G-UCAUGCAUUCUACAUCGGUU   2821 Target Full Sequence	3.0	PREDICTED: Glycine max MLO-like protein 6 (LOC100776714), mRNA	MLO-like protein 6(LOC100776714)	coding protein	psRNATarget