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BaseInfo

ncRNA ID novel_gma_miR4534
Species Glycine max
Class miRNA
Genome position Chr20:37278742-37278838 [+]
Reference genome Glycine_max_v2.0
Source SRR1294487
Length 24
Mature sequence(if miRNA) 1 - CUUCCGGAUGAACAAUUUGUUCUA - 24
Stem-loop(if miRNA) --   C                     -C   AG          --  UA
  CUU CGGAUGAACAAUUUGUUCUAC  GAA  ACCUUCUUCC  AG  G
  ||| |||||||||||||||||||||  |||  ||||||||||  ||
  GAA GCCUACUUGUUAAACAAGAUG  CUU  UGGAAGAAGG  UC  C
AA   A                     AC   CU          CU  UU
Stem-loop sequence CUUCCGGAUGAACAAUUUGUUCUACCGAAAGACCUUCUUCCAGUAGCUUCUUCGGAAGAAGGUUCUUCCAGUAGAACAAAUUGUUCAUCCGAAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588641.2
ncRNA:24   AUCUUGUUUAACAAGUAGGCCUUC   1
  *||||*||*||||||||||||||*
targets:160   AAGAAGAACUUGUUCAUCCGGAAA   183

3.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X1, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget
XM_006588642.2
ncRNA:24   AUCUUGUUUAACAAGUAGGCCUUC   1
  *||||*||*||||||||||||||*
targets:171   AAGAAGAACUUGUUCAUCCGGAAA   194

3.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X2, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget