Search result

BaseInfo

ncRNA ID novel_gma_miR4528
Species Glycine max
Class miRNA
Genome position Chr13:10054621-10054821 [+]
Reference genome Glycine_max_v2.0
Source SRR2045235
Length 24
Mature sequence(if miRNA) 1 - UCGACUAGGGUUUGUUUGGCUGAC - 24
Stem-loop(if miRNA) --UC      -   -  G           C   C    G   UUUCGAA  A           G        -    AAC  CAGCCUAAAAAAUCCUAGCAA
    GACUAG GGU UU UUUGGCUGACA UGG UAGG UCU       UG CAUUGAUCAAG CUAUUUUU AGCC   GU                     G
    |||||| ||| || ||||||||||| ||| |||| |||       || ||||||||||| |||||||| ||||   ||                     C
    CUGGUU CUA AA AAGCCGACUGU GCC AUCC AGA       AC GUAGCUGGUUC GAUAAAAA UCGG   AU                     G
GCAA      A   C  G           A   C    A   -UAACCA  C           -        A    -CU  AAUCCAUCUAAAAAAACAGUU
Stem-loop sequence UCGACUAGGGUUUGUUUGGCUGACACUGGCUAGGGUCUUUUCGAAUGACAUUGAUCAAGGCUAUUUUUAGCCAACGUCAGCCUAAAAAAUCCUAGCAAGCGUUGACAAAAAAAUCUACCUAAUAUCGGCUAAAAAAUAGCUUGGUCGAUGCCAACCAAUAGAACCUACCCGAUGUCAGCCGAAGAACAUCAUUGGUCAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003546197.3
ncRNA:24   CAGUCGGUUUGUUUGGGAUCAGCU   1
  *||*||||||*||||||||*||||
targets:410   CUCUGCCAAAAAAACCCUAAUCGA   433

2.5 PREDICTED: Glycine max uncharacterized LOC100801763 (LOC100801763), mRNA uncharacterized LOC100801763(LOC100801763) coding protein psRNATarget