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BaseInfo

ncRNA ID novel_gma_miR4522
Species Glycine max
Class miRNA
Genome position Chr12:5663537-5663662 [+]
Reference genome Glycine_max_v2.0
Source SRR2045235;SRR1292925;SRR1295529;SRR1451606;SRR1294476
Length 24
Mature sequence(if miRNA) 103 - CCUUUUUAAAAGUCUGGCCUGGCC - 126
Stem-loop(if miRNA) --UA      AG    --        U A   U    UAC      --       --   UUGAGCC
    AGGCCA  CUUU  GAAAGGCC G GCC AGCC   GAUGAA  UCUUUGA  GGC       U
    ||||||  ||||  |||||||| | ||| ||||   ||||||  |||||||  |||
    UCCGGU  GAAA  UUUUCCGG C CGG UCGG   UUAUUU  GGAAACU  CCG       G
CCGG      CU    AU        U -   C    -UU      UC       AU   AUAUCCG
Stem-loop sequence UAAGGCCAAGCUUUGAAAGGCCUGAGCCUAGCCUACGAUGAAUCUUUGAGGCUUGAGCCUGGCCUAUAGCCUAUCAAAGGCUUUUAUUUUGGCUCGGCCUGGCCUUUUUAAAAGUCUGGCCUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003526283.3
ncRNA:24   CCGGUCCGGUCUGAAAAUUUUUCC   1
  ||=|||*|=|||||||||||||||
targets:239   GGUCAGACUAGACUUUUAAAAAGG   262

2.0 PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792539), mRNA UPF0481 protein At3g47200-like(LOC100792539) coding protein psRNATarget
XM_003550759.3
ncRNA:24   CCGGUCCGGUCUGAAAAUUUUUCC   1
  ***|=*|||||||||||||||||*
targets:769   CUACGCGCCAGACUUUUAAAAAGU   792

2.0 PREDICTED: Glycine max NEDD8 ultimate buster 1-like (LOC100778435), mRNA NEDD8 ultimate buster 1-like(LOC100778435) coding protein psRNATarget