ncRNA ID | novel_gma_miR4522 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr12:5663537-5663662 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR2045235;SRR1292925;SRR1295529;SRR1451606;SRR1294476 |
Length | 24 |
Mature sequence(if miRNA) | 103 - CCUUUUUAAAAGUCUGGCCUGGCC - 126 |
Stem-loop(if miRNA) |
--UA      AG    --        U A   U    UAC      --       --   UUGAGCC     AGGCCA  CUUU  GAAAGGCC G GCC AGCC   GAUGAA  UCUUUGA  GGC       U     ||||||  ||||  |||||||| | ||| ||||   ||||||  |||||||  |||     UCCGGU  GAAA  UUUUCCGG C CGG UCGG   UUAUUU  GGAAACU  CCG       G CCGG      CU    AU        U -   C    -UU      UC       AU   AUAUCCG |
Stem-loop sequence | UAAGGCCAAGCUUUGAAAGGCCUGAGCCUAGCCUACGAUGAAUCUUUGAGGCUUGAGCCUGGCCUAUAGCCUAUCAAAGGCUUUUAUUUUGGCUCGGCCUGGCCUUUUUAAAAGUCUGGCCUGGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003526283.3 |
|
2.0 | PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792539), mRNA | UPF0481 protein At3g47200-like(LOC100792539) | coding protein | psRNATarget | |||||||||
XM_003550759.3 |
|
2.0 | PREDICTED: Glycine max NEDD8 ultimate buster 1-like (LOC100778435), mRNA | NEDD8 ultimate buster 1-like(LOC100778435) | coding protein | psRNATarget |