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BaseInfo

ncRNA ID	novel_gma_miR4504
Species	Glycine max
Class	miRNA
Genome position	Chr12:38286298-38286344 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2045234
Length	22
Mature sequence(if miRNA)	1 - UUUGUUUUUUAUUUUUUAUUUU - 22
Stem-loop(if miRNA)	UUUGUU    A           G U       UUUU UUUUUUAUUUU U U       |||| ||||||||||| |       AAAA AGAGAGUGAAA A G -----G    A           G G
Stem-loop sequence	UUUGUUUUUUAUUUUUUAUUUUGUUUGGAGAAAGUGAGAGAAAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006583378.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||||||||||||||||=||| targets:147   AAAAUAAAAAAUAAAAAAUAAA   168 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100808317 (LOC100808317), mRNA	uncharacterized LOC100808317(LOC100808317)	coding protein	psRNATarget
XM_003556643.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||||||||||||||||=||| targets:248   AAAAUAAAAAAUAAAAAAUAAA   269 Target Full Sequence	1.5	PREDICTED: Glycine max erlin-2-B-like (LOC100814351), mRNA	erlin-2-B-like(LOC100814351)	coding protein	psRNATarget
XM_003543185.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||||||||||||||||*||| targets:125   AAAAUAAAAAAUAAAAAAGAAA   146 Target Full Sequence	1.5	PREDICTED: Glycine max squamosa promoter-binding protein 1-like (LOC100815775), mRNA	squamosa promoter-binding protein 1-like(LOC100815775)	coding protein	psRNATarget
XM_006601136.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||||||||||||||||||*| targets:1047   AAAAUAAAAAAUAAAAAACAUA   1068 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor ERF017-like (LOC102665533), mRNA	ethylene-responsive transcription factor ERF017-like(LOC102665533)	coding protein	psRNATarget
AK245701.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |||||||||||*|||||||||| targets:535   AAAAUAAAAAAAAAAAAACAAA   556 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-38-J22	NA	coding protein	psRNATarget
XM_003519565.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |=|||||||||*|||||||||| targets:1690   AGAAUAAAAAAAAAAAAACAAA   1711 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100814102 (LOC100814102), mRNA	uncharacterized LOC100814102(LOC100814102)	coding protein	psRNATarget
XM_003531957.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |||=*||||||||||||||||| targets:41   AAAGCAAAAAAUAAAAAACAAA   62 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100808684 (LOC100808684), mRNA	uncharacterized LOC100808684(LOC100808684)	coding protein	psRNATarget
XM_006606874.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||||||||||||||||=||* targets:171   AAAAUAAAAAAUAAAAAAUAAU   192 Target Full Sequence	2.5	PREDICTED: Glycine max receptor-like protein kinase ANXUR1 (LOC100815737), mRNA	receptor-like protein kinase ANXUR1(LOC100815737)	coding protein	psRNATarget
XM_006581474.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |=||||||||||||||||*||= targets:35   AGAAUAAAAAAUAAAAAAGAAG   56 Target Full Sequence	2.5	PREDICTED: Glycine max 5'-adenylylsulfate reductase-like 4 (LOC100810620), mRNA	5'-adenylylsulfate reductase-like 4(LOC100810620)	coding protein	psRNATarget
AK244267.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*||||||*|||||||||| targets:2050   AAAAAAAAAAAAAAAAAACAAA   2071 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-I19	NA	coding protein	psRNATarget
XM_006593627.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |||||*||||||||||||*||| targets:751   AAAAUCAAAAAUAAAAAAGAAA   772 Target Full Sequence	2.5	PREDICTED: Glycine max nipped-B-like protein (LOC100792021), mRNA	nipped-B-like protein(LOC100792021)	coding protein	psRNATarget
XM_014774668.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*||||||*|||||||||| targets:3939   AAAAGAAAAAACAAAAAACAAA   3960 Target Full Sequence	2.5	PREDICTED: Glycine max putative disease resistance protein RGA4 (LOC100781872), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC100781872)	coding protein	psRNATarget
XM_006578432.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*||||||*|||||||||| targets:3855   AAAAGAAAAAACAAAAAACAAA   3876 Target Full Sequence	2.5	PREDICTED: Glycine max putative disease resistance protein RGA4 (LOC100781872), transcript variant X5, mRNA	putative disease resistance protein RGA4(LOC100781872)	coding protein	psRNATarget
AK243965.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*|||||||||||||*||| targets:4157   AAAAAAAAAAAUAAAAAAAAAA   4178 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-01-L19	NA	coding protein	psRNATarget
XM_003544658.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |||||*|||||||||||*|||| targets:152   AAAAUUAAAAAUAAAAAUCAAA   173 Target Full Sequence	2.5	PREDICTED: Glycine max NAD kinase 2, chloroplastic-like (LOC100782844), transcript variant X1, mRNA	NAD kinase 2, chloroplastic-like(LOC100782844)	coding protein	psRNATarget
AK244341.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*|||||||||||||*||| targets:3362   AAAAAAAAAAAUAAAAAAAAAA   3383 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-M01	NA	coding protein	psRNATarget
AK244134.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*||||||*|||||||||| targets:3313   AAAAAAAAAAAAAAAAAACAAA   3334 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-C24	NA	coding protein	psRNATarget
XM_003526233.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||||*||||||*|||||||||| targets:731   AAAAAAAAAAACAAAAAACAAA   752 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase At1g54610 (LOC100807590), mRNA	probable serine/threonine-protein kinase At1g54610(LOC100807590)	coding protein	psRNATarget
XM_006596159.2	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   |||||*|||||||||||*|||| targets:155   AAAAUUAAAAAUAAAAAUCAAA   176 Target Full Sequence	2.5	PREDICTED: Glycine max NAD kinase 2, chloroplastic-like (LOC100782844), transcript variant X2, mRNA	NAD kinase 2, chloroplastic-like(LOC100782844)	coding protein	psRNATarget
XM_006605453.2	ncRNA:22   UUUUAU---UUUUUAUUUUUUGUUU   1   ||||||---|||||||||||||||| targets:1867   AAAAUAUAAAAAAAUAAAAAACAAA   1891 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC102670399 (LOC102670399), transcript variant X1, mRNA	uncharacterized LOC102670399(LOC102670399)	coding protein	psRNATarget
XM_014773063.1	ncRNA:22   UUUUAU---UUUUUAUUUUUUGUUU   1   ||||||---|||||||||||||||| targets:1458   AAAAUAUAAAAAAAUAAAAAACAAA   1482 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC102670399 (LOC102670399), transcript variant X2, mRNA	uncharacterized LOC102670399(LOC102670399)	coding protein	psRNATarget
XM_003516641.3	ncRNA:22   UUUUAUUUUUUAUUUUU-UGUUU   1   =||||||||||||||||-||||| targets:2098   GAAAUAAAAAAUAAAAACACAAA   2120 Target Full Sequence	3.0	PREDICTED: Glycine max protein DETOXIFICATION 49-like (LOC100811560), mRNA	protein DETOXIFICATION 49-like(LOC100811560)	coding protein	psRNATarget
BT099403.1	ncRNA:22   UUUUAUUUUUUAUUUUUU-GUUU   1   =|||||||||||||||||-|||| targets:242   GAAAUAAAAAAUAAAAAAACAAA   264 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-26N18 unknown mRNA	NA	coding protein	psRNATarget
XM_003536370.3	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||=|*|=||||||||||||||= targets:2536   AAGAAAGAAAAUAAAAAACAAG   2557 Target Full Sequence	3.0	PREDICTED: Glycine max cellulose synthase A catalytic subunit 2 [UDP-forming]-like (LOC100806786), transcript variant X1, mRNA	cellulose synthase A catalytic subunit 2 [UDP-forming]-like(LOC100806786)	coding protein	psRNATarget
XM_014763342.1	ncRNA:22   UUUUAUUUUUUAUUUUUUGUUU   1   ||=|*|=||||||||||||||= targets:1730   AAGAAAGAAAAUAAAAAACAAG   1751 Target Full Sequence	3.0	PREDICTED: Glycine max cellulose synthase A catalytic subunit 2 [UDP-forming]-like (LOC100806786), transcript variant X2, mRNA	cellulose synthase A catalytic subunit 2 [UDP-forming]-like(LOC100806786)	coding protein	psRNATarget